RNA id: TU96836



Basic Information


Item Value
RNA id TU96836
length 165
lncRNA type inter_gene
GC content 0.57
exon number 2
gene id G71755
representative True

Chromosome Information


Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 6714141 ~ 6732589 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence


AGACCAGGAAGGGAACACAGCAGCACAGGCAGAGGGCAGCTTGTCTCCTGGACTGGCCAGAGCGGCAAGGATGGCTGTGGTGGTTGTTCCGATGTTGGAGCCCAGTGTTAAAGGGTATGCCCTCTCCAGTGTGATCACTCCAAGCCCTGCATCAGCCAGAAAAAC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU96776 lncRNA downstream 80492 6627067 ~ 6633649 (-) True G71712
TU96771 lncRNA downstream 101196 6605271 ~ 6612945 (-) True G71708
TU96767 lncRNA downstream 148026 6561124 ~ 6566115 (-) True G71704
TU96758 lncRNA downstream 215843 6493631 ~ 6498298 (-) True G71697
TU96727 lncRNA downstream 254510 6455555 ~ 6459631 (-) True G71675
TU96852 lncRNA upstream 22843 6755432 ~ 6863292 (-) True G71766
TU96851 lncRNA upstream 54931 6787520 ~ 6863292 (-) False G71766
TU96879 lncRNA upstream 148943 6881532 ~ 6885591 (-) True G71790
TU96882 lncRNA upstream 178825 6911414 ~ 6911709 (-) True G71793
TU96907 lncRNA upstream 203209 6935798 ~ 6936080 (-) True G71817
XM_007253585.3 mRNA downstream 121017 6585674 ~ 6593124 (-) True LOC103026932
XM_007253587.2 mRNA downstream 130399 6570816 ~ 6583742 (-) True LOC103027842
XM_022672025.1 mRNA downstream 175359 6522057 ~ 6538782 (-) True LOC103036141
XM_022672026.1 mRNA downstream 175360 6522057 ~ 6538781 (-) False LOC103036141
XM_007253598.3 mRNA downstream 398309 6293684 ~ 6315832 (-) False hars
XM_007253582.3 mRNA upstream 131435 6864024 ~ 6868262 (-) True LOC103025929
XM_007253580.3 mRNA upstream 216987 6949576 ~ 6956193 (-) True LOC103025318
XM_007253579.3 mRNA upstream 252629 6985218 ~ 7006934 (-) True LOC103024994
XM_007253573.2 mRNA upstream 528392 7260981 ~ 7265921 (-) True LOC103022894
XM_007258580.3 mRNA upstream 692094 7424683 ~ 7444873 (-) False kif3a
TU96529 other downstream 872454 5829621 ~ 5841687 (-) True LOC103035656
TU96400 other downstream 1237766 5471666 ~ 5476375 (-) True G71458
trnaw-cca_42 other downstream 1790070 4924000 ~ 4924071 (-) True trnaw-cca_42
TU96095 other downstream 1829653 4882170 ~ 4884488 (-) True G71235
TU96020 other downstream 2301130 4411948 ~ 4413011 (-) True G71175
TU96859 other upstream 44650 6777239 ~ 6824756 (-) True G71771
TU96917 other upstream 324521 7057110 ~ 7057643 (-) True G71826
TU96981 other upstream 577186 7309775 ~ 7312926 (-) True G71862
TU97555 other upstream 1906949 8639538 ~ 8645601 (-) True G72336
TU97699 other upstream 2433289 9165878 ~ 9174309 (-) True G72449

Expression Profile