RNA id: TU96900


Basic Information

Item Value
RNA id TU96900
length 542
lncRNA type inter_gene
GC content 0.56
exon number 1
gene id G71810
representative True

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 7057734 ~ 7058275 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GAGGTGTGGCTTCGGGCGGCCAAACAAAGGCGCGCTTTGAGTCCACCACAGCCCCGTGCCGTGCTCAACTCCGCGGCTTCCTTCCAACCAGGTCACTGGACCCCGCCCAAAAGTGGCGGTtcccgcattctccaccactgtggtaggcccctggggttaggggcgtgaccactgtgacccggaaggaggaagcacacagagatacacagacacggggattaaattaactcaaaacgtacctttattttcgaaaatgccctccaccacacccaaaaacaaacttaaataaacataactcggcccaatggggctctagagtctgtataAATCACTTAATGGTCGTTTAAAGGTCCGTGCGGCCTCAGCTCACTCCTCCCAAGTCCAAGTCTCTCCCGAGTGTGAGCTGAGGCAGAGTTTttatgcctgtcccagctggcggcttaatcagtcctgaatgcacaccggctgggacagacatggctgtgagttccggcgtggggcggacccacggttcccccgcctcctcacgccacaatatatat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU96898 lncRNA upstream 4410 7053023 ~ 7053324 (+) True G71808
TU96876 lncRNA upstream 185370 6872148 ~ 6872364 (+) True G71787
TU96826 lncRNA upstream 189330 6867048 ~ 6868404 (+) True G71747
XR_002650233.1 lncRNA upstream 395731 6656680 ~ 6662003 (+) False LOC111193077
TU96785 lncRNA upstream 395737 6639666 ~ 6661997 (+) True LOC111193077
TU96894 lncRNA downstream 3417 7061692 ~ 7100725 (+) True G71805
TU96963 lncRNA downstream 247884 7306159 ~ 7306542 (+) True G71858
TU96967 lncRNA downstream 251507 7309782 ~ 7311864 (+) False G71859
TU96968 lncRNA downstream 251507 7309782 ~ 7311864 (+) False G71859
TU96964 lncRNA downstream 251757 7310032 ~ 7311864 (+) False G71859
XM_007253581.3 mRNA upstream 117372 6933390 ~ 6940362 (+) True bnip1
XM_022672030.1 mRNA upstream 338706 6678596 ~ 6719028 (+) True LOC103042411
XM_022672027.1 mRNA upstream 423859 6605304 ~ 6633875 (+) False LOC103026234
XM_022672028.1 mRNA upstream 423859 6608340 ~ 6633875 (+) True LOC103026234
XM_007253586.3 mRNA upstream 497999 6541416 ~ 6559735 (+) True LOC103027224
XM_007253575.3 mRNA downstream 80761 7139036 ~ 7173548 (+) True LOC103023840
XM_007253577.3 mRNA downstream 80761 7139036 ~ 7173548 (+) False LOC103023840
XM_022672032.1 mRNA downstream 80761 7139036 ~ 7173548 (+) False LOC103023840
XM_007253576.3 mRNA downstream 80761 7139036 ~ 7173548 (+) False LOC103023840
XM_007253578.3 mRNA downstream 80761 7139036 ~ 7173548 (+) False LOC103023840
TU96877 other upstream 172193 6881587 ~ 6885541 (+) True G71788
TU96736 other upstream 518940 6525641 ~ 6538794 (+) True G71682
trnaa-agc_15 other upstream 1019986 6037676 ~ 6037748 (+) True trnaa-agc_15
trnaa-agc_14 other upstream 1020860 6036802 ~ 6036874 (+) True trnaa-agc_14
TU96351 other upstream 1552096 5499908 ~ 5505638 (+) True G71414
TU97487 other downstream 2084624 9142899 ~ 9149419 (+) True G72281
TU97933 other downstream 3020304 10078579 ~ 10082140 (+) True G72621
trnar-ucg_4 other downstream 5545077 12603352 ~ 12603424 (+) True trnar-ucg_4
XR_002650241.1 other downstream 5813209 12871484 ~ 12897931 (+) False LOC103043719
TU99159 other downstream 7590554 14648829 ~ 14649551 (+) True G73533

Expression Profile