RNA id: TU96916


Basic Information

Item Value
RNA id TU96916
length 422
lncRNA type inter_gene
GC content 0.57
exon number 1
gene id G71825
representative True

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 7052898 ~ 7053319 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GGGGGGGCCCAAGCGAACGAACTGCATCCCCCGCTCTCCTCACCCCGCCTCTCTTCGTTCGCTCCAGTCACCAGGTCACGCCTCACCTTCGACCCTGGTGGCTGGAAGCTTAGGGGGAGggactgtggcgtgaggaggcgggggaaccgtgggtccgccccacgccggaactcacagccatgtctgtcccagccggtgtgcattcaggactgattaagccgccagctgggacaggcataaAAACTCTGCCTCAGCTCACACTCGAGAGAGACTTGGACTTGGGAGGAGTGAGCTGAGGCCGCACGGACCTTTAACGACCATTAAGTGATTtatacagactctagagccccattgggccgagttatgtttatttaagtttgtttttgggtgtggtggagggcattttcgaaaataaaggtatg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU96913 lncRNA downstream 69895 6982803 ~ 6983003 (-) True G71822
TU96907 lncRNA downstream 116818 6935798 ~ 6936080 (-) True G71817
TU96882 lncRNA downstream 141189 6911414 ~ 6911709 (-) True G71793
TU96879 lncRNA downstream 167307 6881532 ~ 6885591 (-) True G71790
TU96852 lncRNA downstream 189606 6755432 ~ 6863292 (-) True G71766
TU96941 lncRNA upstream 77432 7130751 ~ 7172911 (-) True G71839
TU96942 lncRNA upstream 77432 7130751 ~ 7175962 (-) False G71839
TU96949 lncRNA upstream 111813 7165132 ~ 7181452 (-) True G71845
XR_002650220.1 lncRNA upstream 248507 7301826 ~ 7302308 (-) True LOC111193041
TU97033 lncRNA upstream 289915 7343234 ~ 7343434 (-) True G71900
XM_007253579.3 mRNA downstream 45964 6985218 ~ 7006934 (-) True LOC103024994
XM_007253580.3 mRNA downstream 96705 6949576 ~ 6956193 (-) True LOC103025318
XM_007253582.3 mRNA downstream 184636 6864024 ~ 6868262 (-) True LOC103025929
XM_007253585.3 mRNA downstream 459774 6585674 ~ 6593124 (-) True LOC103026932
XM_007253587.2 mRNA downstream 469156 6570816 ~ 6583742 (-) True LOC103027842
XM_007253573.2 mRNA upstream 207662 7260981 ~ 7265921 (-) True LOC103022894
XM_007258580.3 mRNA upstream 371364 7424683 ~ 7444873 (-) False kif3a
XM_022672035.1 mRNA upstream 371364 7424683 ~ 7444873 (-) True kif3a
XM_007258582.3 mRNA upstream 371364 7424683 ~ 7444871 (-) False kif3a
XM_022672036.1 mRNA upstream 371364 7424683 ~ 7444871 (-) False kif3a
TU96859 other downstream 228142 6777239 ~ 6824756 (-) True G71771
TU96529 other downstream 1211211 5829621 ~ 5841687 (-) True LOC103035656
TU96400 other downstream 1576523 5471666 ~ 5476375 (-) True G71458
trnaw-cca_42 other downstream 2128827 4924000 ~ 4924071 (-) True trnaw-cca_42
TU96095 other downstream 2168410 4882170 ~ 4884488 (-) True G71235
TU96917 other upstream 3791 7057110 ~ 7057643 (-) True G71826
TU96981 other upstream 256456 7309775 ~ 7312926 (-) True G71862
TU97555 other upstream 1586219 8639538 ~ 8645601 (-) True G72336
TU97699 other upstream 2112559 9165878 ~ 9174309 (-) True G72449
TU97707 other upstream 2169373 9222692 ~ 9225559 (-) True G72453

Expression Profile