RNA id: TU96941


Basic Information

Item Value
RNA id TU96941
length 1362
lncRNA type inter_gene
GC content 0.32
exon number 3
gene id G71839
representative True

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 7130751 ~ 7175962 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ttttttttacacatattagTGGTATTTTTAGTATACAATTCAGAGAACACAAAAAGGAAGGCTATAATGGATTGATAAAGACTAATAAAGGAGTGATAAAGAGGGATGTGATTTGGGTTAAAACTGAACTGAGagttataattaaatataactgAAGATTTATACTGCTGCAGAGATTGTTTCTggagagaagaaataaaaatataaatattgcacATAACTCGAGGTTATTTTGCAAGTATTATCACATTCAAGTCTCAAAGCCCCGGAACCACTGCGGGGTGTACCGGTTTTACTGAAAGTCTTTCTGAAGACGTCTTTCTGAAGACGTCTTTCTGAATGTAGCCGGAAAATAGCCTGTTTTCTGCCAGGCCATCTCTCAAATACAAGAAATAGAAGCTGTAGTTGGGTCAGACAAGGAGGATTTGAAAGgagttacataaaaaaaatataacaaaatgcaAACGTAAGCCAAGACCCATATCAAATTATCATTATCTTTGTCTTAGGTCATGCATACTTGGCAAAAATGAGCTTGTCTGCCATTCAGGATTATACTTACTGATACATACTGAGATTTCACTATATGGAACATTCCTAATTGAGATACAAGGTGCATCCTATCGTAATTTTATTCCTACAGTCAGCAACAAGGGAAGGAATCCTCAACGTTATCGAGAACAGTTCAGTAAAtgttagatatttaaatatttagatattctACTAAGTGCCACACACTTAAAGGTGTTCTCGGCATGCTCGCTTCAATATTTACTCCTCAAATTTCcgctattatatatatagatttatgcATATAAAAAGCTTAATCGAAAATTATATTAACTTTTCTTAAGGTTTGCCTTATATCCAGGTCTCTTTGTAACAAAGGTACAAAATCTATACCCAACAAGTGAAAAAAATGAGGTATCGCAAAACGACTTTCCATTTTGTGAGAAAAGAAAATGTGCCTAAATAATGACTTTGAAAAAGAATATATAGAAAAAGTAGTGCATATGTTTATGTTAATGACAAAATAACCATCTAGAAAACACAGTACAAAAATCAGCAGAccatgtataaaataatatttgtttcTCTCTTACAGAAAAGTCTTTGAAATGTGCTCAGCTACCACAATGCTCGATCAGAACGGCAAAAACTCTTGGAAAAAAAGTCATGCAATCAAATACTATCAATCAGTACAACACGTGGTAATTCTTCATTAGTACTACAATATTAAGTTAGCTTTTTAGCACAAATTCCCTGACAAGTGAGCAATGTTACTGCCATAACCAGTTATTTCTTAAGGAATCttatcagctgttttttttttttttttttttttttttttttttttttttt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU96916 lncRNA downstream 77432 7052898 ~ 7053319 (-) True G71825
TU96913 lncRNA downstream 147748 6982803 ~ 6983003 (-) True G71822
TU96907 lncRNA downstream 194671 6935798 ~ 6936080 (-) True G71817
TU96882 lncRNA downstream 219042 6911414 ~ 6911709 (-) True G71793
TU96879 lncRNA downstream 245160 6881532 ~ 6885591 (-) True G71790
XR_002650220.1 lncRNA upstream 128915 7301826 ~ 7302308 (-) True LOC111193041
TU97033 lncRNA upstream 170323 7343234 ~ 7343434 (-) True G71900
TU97044 lncRNA upstream 324870 7497781 ~ 7498483 (-) True G71911
TU97047 lncRNA upstream 348621 7521532 ~ 7521741 (-) True G71914
TU97104 lncRNA upstream 378274 7551185 ~ 7554641 (-) True LOC103027657
XM_007253579.3 mRNA downstream 123817 6985218 ~ 7006934 (-) True LOC103024994
XM_007253580.3 mRNA downstream 174558 6949576 ~ 6956193 (-) True LOC103025318
XM_007253582.3 mRNA downstream 262489 6864024 ~ 6868262 (-) True LOC103025929
XM_007253585.3 mRNA downstream 537627 6585674 ~ 6593124 (-) True LOC103026932
XM_007253587.2 mRNA downstream 547009 6570816 ~ 6583742 (-) True LOC103027842
XM_007253573.2 mRNA upstream 88070 7260981 ~ 7265921 (-) True LOC103022894
XM_007258580.3 mRNA upstream 251772 7424683 ~ 7444873 (-) False kif3a
XM_022672035.1 mRNA upstream 251772 7424683 ~ 7444873 (-) True kif3a
XM_007258582.3 mRNA upstream 251772 7424683 ~ 7444871 (-) False kif3a
XM_022672036.1 mRNA upstream 251772 7424683 ~ 7444871 (-) False kif3a
TU96917 other downstream 73108 7057110 ~ 7057643 (-) True G71826
TU96859 other downstream 305995 6777239 ~ 6824756 (-) True G71771
TU96529 other downstream 1289064 5829621 ~ 5841687 (-) True LOC103035656
TU96400 other downstream 1654376 5471666 ~ 5476375 (-) True G71458
trnaw-cca_42 other downstream 2206680 4924000 ~ 4924071 (-) True trnaw-cca_42
TU96981 other upstream 136864 7309775 ~ 7312926 (-) True G71862
TU97555 other upstream 1466627 8639538 ~ 8645601 (-) True G72336
TU97699 other upstream 1992967 9165878 ~ 9174309 (-) True G72449
TU97707 other upstream 2049781 9222692 ~ 9225559 (-) True G72453
TU98300 other upstream 4347976 11520887 ~ 11545223 (-) False LOC111193052

Expression Profile