RNA id: TU96963


Basic Information

Item Value
RNA id TU96963
length 384
lncRNA type inter_gene
GC content 0.45
exon number 1
gene id G71858
representative True

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 7306159 ~ 7306542 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TATCACCAACAGCATGAATCTATGCtacttttgccccgtttttctgcgctagaaatgcgtaccctctccgcttttagactctttggcctgttttttttgcgctagatatgagcagcctctccgcttttagactctttggcccatttctgacacctagcgttcaaactttgaatctcacattataaaaacctgctgaacagcgggccaactttcattctatttctaaaatacctcgcgggccgctccaaaaaaggaaacgggccgcaaatggcccgcgggccgtagtttggacacccctgatgtaggggatattttctttttttgagctCTTAATACTAATCAATCACTGATTTAATGCTACAGTCTGTTTGAGtgttgttgctg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU96894 lncRNA upstream 205434 7061692 ~ 7100725 (+) True G71805
TU96900 lncRNA upstream 247884 7057734 ~ 7058275 (+) True G71810
TU96898 lncRNA upstream 252835 7053023 ~ 7053324 (+) True G71808
TU96876 lncRNA upstream 433795 6872148 ~ 6872364 (+) True G71787
TU96826 lncRNA upstream 437755 6867048 ~ 6868404 (+) True G71747
TU96967 lncRNA downstream 3240 7309782 ~ 7311864 (+) False G71859
TU96968 lncRNA downstream 3240 7309782 ~ 7311864 (+) False G71859
TU96964 lncRNA downstream 3490 7310032 ~ 7311864 (+) False G71859
TU96970 lncRNA downstream 3490 7310032 ~ 7311864 (+) False G71859
TU96965 lncRNA downstream 4061 7310603 ~ 7311864 (+) True G71859
XM_007253574.3 mRNA upstream 93663 7206477 ~ 7212496 (+) True LOC103023202
XM_007253575.3 mRNA upstream 132611 7139036 ~ 7173548 (+) True LOC103023840
XM_007253577.3 mRNA upstream 132611 7139036 ~ 7173548 (+) False LOC103023840
XM_022672032.1 mRNA upstream 132611 7139036 ~ 7173548 (+) False LOC103023840
XM_007253576.3 mRNA upstream 132611 7139036 ~ 7173548 (+) False LOC103023840
XM_022672039.1 mRNA downstream 306170 7612712 ~ 7652490 (+) True LOC103027052
XM_007258578.3 mRNA downstream 365016 7671558 ~ 7674663 (+) True LOC103027348
XM_007258573.3 mRNA downstream 413338 7719880 ~ 7725813 (+) True mars2
XM_022672043.1 mRNA downstream 1133595 8440137 ~ 8641348 (+) True spock1
XM_022672044.1 mRNA downstream 1368307 8674849 ~ 8687469 (+) True LOC103031395
TU96877 other upstream 420618 6881587 ~ 6885541 (+) True G71788
TU96736 other upstream 767365 6525641 ~ 6538794 (+) True G71682
trnaa-agc_15 other upstream 1268411 6037676 ~ 6037748 (+) True trnaa-agc_15
trnaa-agc_14 other upstream 1269285 6036802 ~ 6036874 (+) True trnaa-agc_14
TU96351 other upstream 1800521 5499908 ~ 5505638 (+) True G71414
TU97487 other downstream 1836357 9142899 ~ 9149419 (+) True G72281
TU97933 other downstream 2772037 10078579 ~ 10082140 (+) True G72621
trnar-ucg_4 other downstream 5296810 12603352 ~ 12603424 (+) True trnar-ucg_4
XR_002650241.1 other downstream 5564942 12871484 ~ 12897931 (+) False LOC103043719
TU99159 other downstream 7342287 14648829 ~ 14649551 (+) True G73533

Expression Profile