RNA id: TU97006


Basic Information

Item Value
RNA id TU97006
length 2802
lncRNA type inter_gene
GC content 0.47
exon number 16
gene id G71878
representative True

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 7424704 ~ 7441750 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

taaattaagaagTATACAGAGTACAGCACAGTAAATGTAAacattataatgtaaaataaaggtcACATTGTTCGAGTGCAGTGTGCATGTGATAGctcataaaactaaaacaaaatacagttaGTCAGTGTGAAATGGCAATACAAGCGTAGGGGGGTAAACAGCATGCAGGTTCTCCAACCCCTCCCCCCTCCAAATCCTACAAAATGAGGTTAGCTGCACACGATAAATACACAAAGTAAAAGACTACAGTGTAACTGCAAACTGCCAAATAGTACAAGCATCAAGCATGTGATTCATATCTAAAGCAGCTTGCTCAAGACGACAGGCTAATCAGTTAGAGCATCTGAATCGTAATATCCTGCTCCTGAGGCTTTCAGGTGTCCTGCACtgcactgaactgaactgaacagacAGCGACACAAAACCCAACACTCTAGTAACAGCTCCAGCTCTGTGGAATAAATTGAGTCTTTAGCTCAATGCATTTACTGAAATGAATCAGTGAGTCAGGGCTTTTAGATCAGCAGTTAAGAAGCAGGTAACATCATTACTCCTCTATATGTACACTAGATTGATTTGCTCATTTCTTCAACAacaatttaaatgtgtttagtcAGTTTGCTTACATCTTTACACAATTCACGTCAAATAATTCTTAAACCTCATGAAAGGACCAGCCTGGACTGCAGTCAGAGACGGAGATGAAGCTCACTGCAGGAGGGAGTCGATCACTGTATCTGGCCTAGATGAGCgtttcCTGCGGCTAGTCTTGGGCCTTGACTTGCCACCTTTTGAAGTCCTGGGCCTCTCCAGCTTCATCAAAGACTGCCGCATGCTCTCCTCCGTATACGCAAGATACACGTGAGAGAGGTCCACTTCAAACGGATCCTTTTCCTTCTTGTCTGGCACTGGGGTTTGTTTTCTCATGTTGTTGCCAGTATAGGCCAcacatttCAGTTGCCATTCACCAATATCTTCATTCCAGTGTACATAATTTTCAATCATTTCCTGGTATTCCTGAGGGATGAAATTGTCGATGATGAGCATCTGCAGGCGGAGTTCTCGGCTGAGTTGGCGGATGTTCTCCAGTAGCCCCTCAATTTCCCTGTGATGCTCCTGCTGCAGGTCTGCCCTCTGACTTTGCAGCCATCAGCATGGTCCAGACTTTCTTTAATTTCTTGGTCTTGCCCTGGGCCTCCTCCTGCAAACTGGTGTATTTCTCCTCAATGTCCAAGCGCTCTTGCTCCTTCTCTTCCAGTTCTTTGCGCAGCTGCTCAGCTCTTTTCCGTCGTTCCTCCAGTTCATTGTTGGACTCCTCCAAAAGCTTTTCCTGCTCTTCAGCCTTGGCCAGCAAGTCAACACCTCCTACAATAACCTTCTTCTCCAGAGCAGAGAGCTTCTCTAGCAATAAGTGATGTTCTTGTTGTGCTTTCAGTaggtctttttctcttttctccagCTCTGCTCGTGCTTtgttcctctcctcctcctccatgtcCAGCTTGGCCTCCAGGGCCTTGCGTTCTTCTTCGATCTTTGCCTGCATCTCCACCATCTTGTCTGGAGACATCTTCTTCTTTCCTCGTCGATTCCGGGGTCTCTCTCCACCGATTCCGGCCTCGTCCTCTCCTTCATCCATCTCTTCAGAGCCGCTGCCCTCTGAACCGGAGATTTCTCCTTCTTCCAGTTTTCTCTTGAGTTCTTCGATTTCTTTCTGAAACTGGCGCAACAGTGCATCTTTGGGGTCCTCATTAATTCTGGCCTTATTCTTGATGTTCTTCGCTCGGTTAGCATAGCGCAAGGTGCTGATGGTCTCATCGTAGTTGTAGTCAGCTGGACCAATGTTTGCACaCATCATGGTTTTAGAGTTTCCTCCCAGAGAGTCCTGCAGAAGGCGGGTGAGTTTGGAGTTCCTGTAGGGCACGTGTGTGCTCTTTCCATCCACTAGAGCAGAGATGACATTGCCCAGGGTGGACAGGGACAGGTTGATCTTAGTTGCTTCTTTAAGACGTTGTCCAGTGGCACCCGTTTTCCCCTGCCTCTCTGAACCCGCAAGGTCCACCAAGTGTAGTTTACCCATTCGCACATGCTGGTTTCCATCAATGCCCTTCTCACTGCACTCAATGGTGATGGTGAAGATGGCGTGAGAGCGGGAGCTGTGCTCGTTCATATTGGTAGCACCCACAGAACGGTTCTTATGGCCGAGAGTCATAATTCTATCCATGTCATCTGCATTGTTCACAACATATCCAGAAAGGTCTTTAATGTAGACTCCCACATCTGGCCTCTCTTTTACCTCCAATCTCTGCATCTGGTCCTTCCCCAGCAGGTCCCTCACTTCCTCATTGTAGATTTCCAAGTATGAAACTCTAACTAAAAACCTTGTGTCTCCCTCTGCTTTAGCGATGTGGCCAAAGATGTGAGCAAATGAATTTGGTATGATCCCTCTGAGCTCAGGCACGGCTCTCACTCCCTCCATGGTGAAGGTTTTTCCAGTGCCTGTTTGACCATAGGCGAATATTGTTCCGTTATACCCCTCCAATACTGAATCAACAATGGGTCGGGCTGTTAAATTGTAGACATCCAGCTGTTTGCTGTCGGGACTGAATACTGTGTCGAATGTGAAGGTCTTTGGCGGCTCGTGGGGCGTCTCAGTCTTGTTCACAGTAATGGTCCCTCGCATTTCGTCCACAGTGACCGACTGTTTGTGTCccatcattttttctttttggttgAGGGGTCGACATCGCACCACCACCTTCACATTATCGCTGACCTCAGCCTTTTCTGGCTTATCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU96967 lncRNA upstream 112840 7309782 ~ 7311864 (+) False G71859
TU96968 lncRNA upstream 112840 7309782 ~ 7311864 (+) False G71859
TU96964 lncRNA upstream 112840 7310032 ~ 7311864 (+) False G71859
TU96970 lncRNA upstream 112840 7310032 ~ 7311864 (+) False G71859
TU96965 lncRNA upstream 112840 7310603 ~ 7311864 (+) True G71859
TU97024 lncRNA downstream 31111 7472861 ~ 7473404 (+) True G71891
TU97025 lncRNA downstream 35716 7477466 ~ 7477724 (+) True G71892
TU97027 lncRNA downstream 41913 7483663 ~ 7484151 (+) True G71894
TU97028 lncRNA downstream 44420 7486170 ~ 7486410 (+) True G71895
TU97043 lncRNA downstream 56028 7497778 ~ 7498270 (+) True G71910
XM_007253574.3 mRNA upstream 212208 7206477 ~ 7212496 (+) True LOC103023202
XM_022672032.1 mRNA upstream 251156 7139036 ~ 7173548 (+) False LOC103023840
XM_022672039.1 mRNA downstream 170962 7612712 ~ 7652490 (+) True LOC103027052
XM_007258578.3 mRNA downstream 229808 7671558 ~ 7674663 (+) True LOC103027348
XM_007258573.3 mRNA downstream 278130 7719880 ~ 7725813 (+) True mars2
XM_022672043.1 mRNA downstream 998387 8440137 ~ 8641348 (+) True spock1
XM_022672044.1 mRNA downstream 1233099 8674849 ~ 8687469 (+) True LOC103031395
TU96877 other upstream 539163 6881587 ~ 6885541 (+) True G71788
TU96736 other upstream 885910 6525641 ~ 6538794 (+) True G71682
trnaa-agc_15 other upstream 1386956 6037676 ~ 6037748 (+) True trnaa-agc_15
trnaa-agc_14 other upstream 1387830 6036802 ~ 6036874 (+) True trnaa-agc_14
TU96351 other upstream 1919066 5499908 ~ 5505638 (+) True G71414
TU97487 other downstream 1701149 9142899 ~ 9149419 (+) True G72281
TU97933 other downstream 2636829 10078579 ~ 10082140 (+) True G72621
trnar-ucg_4 other downstream 5161602 12603352 ~ 12603424 (+) True trnar-ucg_4
XR_002650241.1 other downstream 5429734 12871484 ~ 12897931 (+) False LOC103043719
TU99159 other downstream 7207079 14648829 ~ 14649551 (+) True G73533

Expression Profile