RNA id: TU97024



Basic Information


Item Value
RNA id TU97024
length 544
lncRNA type inter_gene
GC content 0.45
exon number 1
gene id G71891
representative True

Chromosome Information


Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 7472861 ~ 7473404 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence


tgatACTttctagtgttgcataatgagCCTTCTGCATGTCTTATAGTGCGAATAAAACGGTACTTCACAGCATTGTTCTGTCATTATTCTCTCCTCCTTTAAACCTACAAATCTATACGTTTCACACAAAGTCAAATCAACTATGCATACTGAAAACATTACATGTTAGACTCACCTCAGTGAACTGCAGAGGAAAGATCCCCACCCTGTCCCTCAGTCTCCCTTCACACCAGTTCTCATCCACCCGCTTAATGACACTAATGAGGTCTCCCtggataagaaaacaaaaagagagaggagaacagGGACAGACAATGTGAGATAAGGGAAAaacagcgggagagagagaTCCACGTGTGGAGCTTCTAGAGATGCACGGGTGTCCCAGAAGAGGTTTTCTTGACTGAAATCACTTTCAGCTGCAGATATCATGTCCCCTTTGTGCCTCCGGGCCCCTAACTCGTCTCCCTTAACTCCAATCCAGACCCATCTGCTCTCAGAAAAAGCCCCACTTCACTGGGATGCTCTTTAATGGAAGTCTTGC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU97006 lncRNA upstream 31111 7424704 ~ 7441750 (+) True G71878
TU97008 lncRNA upstream 41308 7424704 ~ 7431553 (+) False G71878
TU96967 lncRNA upstream 160997 7309782 ~ 7311864 (+) False G71859
TU97025 lncRNA downstream 4062 7477466 ~ 7477724 (+) True G71892
TU97027 lncRNA downstream 10259 7483663 ~ 7484151 (+) True G71894
TU97028 lncRNA downstream 12766 7486170 ~ 7486410 (+) True G71895
TU97043 lncRNA downstream 24374 7497778 ~ 7498270 (+) True G71910
TU97050 lncRNA downstream 53925 7527329 ~ 7527791 (+) True G71917
XM_007253574.3 mRNA upstream 260365 7206477 ~ 7212496 (+) True LOC103023202
XM_022672032.1 mRNA upstream 299313 7139036 ~ 7173548 (+) False LOC103023840
XM_022672039.1 mRNA downstream 139308 7612712 ~ 7652490 (+) True LOC103027052
XM_007258578.3 mRNA downstream 198154 7671558 ~ 7674663 (+) True LOC103027348
XM_007258573.3 mRNA downstream 246476 7719880 ~ 7725813 (+) True mars2
XM_022672043.1 mRNA downstream 966733 8440137 ~ 8641348 (+) True spock1
XM_022672044.1 mRNA downstream 1201445 8674849 ~ 8687469 (+) True LOC103031395
TU96877 other upstream 587320 6881587 ~ 6885541 (+) True G71788
TU96736 other upstream 934067 6525641 ~ 6538794 (+) True G71682
trnaa-agc_15 other upstream 1435113 6037676 ~ 6037748 (+) True trnaa-agc_15
trnaa-agc_14 other upstream 1435987 6036802 ~ 6036874 (+) True trnaa-agc_14
TU96351 other upstream 1967223 5499908 ~ 5505638 (+) True G71414
TU97487 other downstream 1669495 9142899 ~ 9149419 (+) True G72281
TU97933 other downstream 2605175 10078579 ~ 10082140 (+) True G72621
trnar-ucg_4 other downstream 5129948 12603352 ~ 12603424 (+) True trnar-ucg_4
XR_002650241.1 other downstream 5398080 12871484 ~ 12897931 (+) False LOC103043719
TU99159 other downstream 7175425 14648829 ~ 14649551 (+) True G73533

Expression Profile