RNA id: TU97028



Basic Information


Item Value
RNA id TU97028
length 241
lncRNA type inter_gene
GC content 0.49
exon number 1
gene id G71895
representative True

Chromosome Information


Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 7486170 ~ 7486410 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence


CTCCAGGTAACCATTtcaacacagacacacgcagGTACTAACAATACAGCAccttcagcacctccagcacgTACCAGCCCCTTTATCCTAGCAGACCAGTGTCCATTAACACCAATAAACCTTCTGTTTCCACCCAAACTACTCTAAAAACAGGCTGCAGTAAACTAAAACTACCTGCACCAGCAGCTCTACCGTCTACAGCAGCACCTGACCAGCAGCAGGAAGTCAGCTAAAATGCGCC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU97027 lncRNA upstream 2019 7483663 ~ 7484151 (+) True G71894
TU97025 lncRNA upstream 8446 7477466 ~ 7477724 (+) True G71892
TU97024 lncRNA upstream 12766 7472861 ~ 7473404 (+) True G71891
TU97006 lncRNA upstream 44420 7424704 ~ 7441750 (+) True G71878
TU97008 lncRNA upstream 54617 7424704 ~ 7431553 (+) False G71878
TU97043 lncRNA downstream 11368 7497778 ~ 7498270 (+) True G71910
TU97050 lncRNA downstream 40919 7527329 ~ 7527791 (+) True G71917
TU97062 lncRNA downstream 91300 7577710 ~ 7652863 (+) True G71928
TU97065 lncRNA downstream 189133 7675543 ~ 7675776 (+) True G71931
TU97066 lncRNA downstream 189982 7676392 ~ 7685337 (+) True G71932
XM_007253574.3 mRNA upstream 273674 7206477 ~ 7212496 (+) True LOC103023202
XM_022672032.1 mRNA upstream 312622 7139036 ~ 7173548 (+) False LOC103023840
XM_022672039.1 mRNA downstream 126302 7612712 ~ 7652490 (+) True LOC103027052
XM_007258578.3 mRNA downstream 185148 7671558 ~ 7674663 (+) True LOC103027348
XM_007258573.3 mRNA downstream 233470 7719880 ~ 7725813 (+) True mars2
XM_022672043.1 mRNA downstream 953727 8440137 ~ 8641348 (+) True spock1
XM_022672044.1 mRNA downstream 1188439 8674849 ~ 8687469 (+) True LOC103031395
TU96877 other upstream 600629 6881587 ~ 6885541 (+) True G71788
TU96736 other upstream 947376 6525641 ~ 6538794 (+) True G71682
trnaa-agc_15 other upstream 1448422 6037676 ~ 6037748 (+) True trnaa-agc_15
trnaa-agc_14 other upstream 1449296 6036802 ~ 6036874 (+) True trnaa-agc_14
TU96351 other upstream 1980532 5499908 ~ 5505638 (+) True G71414
TU97487 other downstream 1656489 9142899 ~ 9149419 (+) True G72281
TU97933 other downstream 2592169 10078579 ~ 10082140 (+) True G72621
trnar-ucg_4 other downstream 5116942 12603352 ~ 12603424 (+) True trnar-ucg_4
XR_002650241.1 other downstream 5385074 12871484 ~ 12897931 (+) False LOC103043719
TU99159 other downstream 7162419 14648829 ~ 14649551 (+) True G73533

Expression Profile