RNA id: TU97062


Basic Information

Item Value
RNA id TU97062
length 370
lncRNA type sense_over
GC content 0.47
exon number 2
gene id G71928
representative True

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 7577710 ~ 7652863 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

agagagagagagagagagagagagagagagagaaatctatatataatataaacagctCAGGCCCTCAGTCCCTTCGTTTGCAGTCCTTTTATTCAGCTCTGGGTGGTGGCTCCTCAATCCCTTCAGTGGTCGTGTACACATCCCTGCCCATTTTAGCAGGTGCTCCTCTGTTTAATCAGCACAACGCTAACCCCCTCCCAGTTTCCCCAGTGCTTATCACAGACCTTCCTGCCCCATTCCTAGATAGACCACAGCAGACGAAAGCAACATGCTAGCCTCACTACTCACACTTTCTCGGGGAATTTCTACGAGCCTGTATTGTCGTAATCTGTTCTTTCCGTGCCAAACGTGTACTAATTTCTGATTTTTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU97050 lncRNA upstream 49919 7527329 ~ 7527791 (+) True G71917
TU97043 lncRNA upstream 79440 7497778 ~ 7498270 (+) True G71910
TU97028 lncRNA upstream 91300 7486170 ~ 7486410 (+) True G71895
TU97027 lncRNA upstream 93559 7483663 ~ 7484151 (+) True G71894
TU97025 lncRNA upstream 99986 7477466 ~ 7477724 (+) True G71892
TU97065 lncRNA downstream 22680 7675543 ~ 7675776 (+) True G71931
TU97066 lncRNA downstream 23529 7676392 ~ 7685337 (+) True G71932
TU97074 lncRNA downstream 47019 7699882 ~ 7711858 (+) True G71936
TU97076 lncRNA downstream 58748 7711611 ~ 7718943 (+) False G71936
TU97086 lncRNA downstream 80579 7733442 ~ 7736160 (+) True G71944
XM_007253574.3 mRNA upstream 365214 7206477 ~ 7212496 (+) True LOC103023202
XM_022672032.1 mRNA upstream 404162 7139036 ~ 7173548 (+) False LOC103023840
XM_007258578.3 mRNA downstream 18695 7671558 ~ 7674663 (+) True LOC103027348
XM_007258573.3 mRNA downstream 67017 7719880 ~ 7725813 (+) True mars2
XM_022672043.1 mRNA downstream 787274 8440137 ~ 8641348 (+) True spock1
XM_022672044.1 mRNA downstream 1021986 8674849 ~ 8687469 (+) True LOC103031395
XM_022672045.1 mRNA downstream 1039087 8691950 ~ 8726635 (+) False LOC103028966
TU96877 other upstream 692169 6881587 ~ 6885541 (+) True G71788
TU96736 other upstream 1038916 6525641 ~ 6538794 (+) True G71682
trnaa-agc_15 other upstream 1539962 6037676 ~ 6037748 (+) True trnaa-agc_15
trnaa-agc_14 other upstream 1540836 6036802 ~ 6036874 (+) True trnaa-agc_14
TU96351 other upstream 2072072 5499908 ~ 5505638 (+) True G71414
TU97487 other downstream 1490036 9142899 ~ 9149419 (+) True G72281
TU97933 other downstream 2425716 10078579 ~ 10082140 (+) True G72621
trnar-ucg_4 other downstream 4950489 12603352 ~ 12603424 (+) True trnar-ucg_4
XR_002650241.1 other downstream 5218621 12871484 ~ 12897931 (+) False LOC103043719
TU99159 other downstream 6995966 14648829 ~ 14649551 (+) True G73533

Expression Profile