RNA id: TU97074


Basic Information

Item Value
RNA id TU97074
length 2153
lncRNA type inter_gene
GC content 0.47
exon number 13
gene id G71936
representative True

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 7699882 ~ 7718943 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TGAACCAATCACACTTTaaacttaatatttattaaaacccaACAGTTGCCACAGATTCAAATATTTCGCAGTACACCACATATACTCAACCATGTGCGCACACAGCATTTGATGTCAAAGAGCACTCTTATTGCATTACGCTTtcggtttatttatttaatcatttttaacaaaAGGATGAACATGCACCATGTAGCCACTAATCATTCTGACTGTCGAAACAACCTCATGGCAGGGGAGATGGAATGATTTGAGCGGCGAGGGGTGGGTAAGACAGGAGGACACAGCCAACTTAGTCAAGGTCCATTTCTGGTTTGGAGTTGGTGCCTTCGGCAGGCACTTTCTCGTTGGCCCCAGCCTCGGCTTCAGTGCTCTCCTGCCCGTTGACTGGTCCATTCTGTTCTGCTGGTTTTTCGTCTTTTGGCAGCTCCACTTTTGGCTTGGGTTTGGTCACGATGGGGTTGCAAGTGGAGAACAGCTCCCTTGTTTTCGCTATAATCTCTGCAGCTTTCACCACTGGATCCACATTCAGACTCTGCTTACTCTGCTGATTCATCTTGCTGTTCATCCATATCATAACCTCACCCACCATCTTATCCACTTTCTGCACCTCCGCCTCGTCCAAATGATCATACGGCTCGTCCTTCATTTTAAAGGCCTCCACAATTTTCATGTACTGCTGAAGCTGTTTCCCCAGCTCCTCAAAAGCCTTTGGTCGCTCCTCATACTCTGAGTATCGGTCCTGAACAGGTTGGCCCAGTTTCTTTAAATCAGCCAGCCTGTCAATGTACACTTGCTTAGGTTGGTCCTCTCCGTCTTCATACAGCCAGTTCTCTGTGTCCTCCAGTTTTAATGAGAACGCGTCTCTGTACTTTCAGTGATGAACTTCTCAAACATGCCGTGCAGTTTGTCCCTCATATCGTACACATACTCCTCCACGTTGTTCTTGGCATCATTGCGCTCTTTTTCAAGCTTGTCCTGCATGATCATCTTTCCCGTTCTCCACAAACAGATTAAGCATCTCGATCGCCAGCTGCCACTGCGGATTGTTTTCAATGGGCAGCTCCAGCACTTTTGTCTTGACTTTAGGCTTTTTAGCTTGTGGCGGCTGATCAGTCTTCTTCTCTTGTTTGCCTTCTTCTGATGTCTCCATTTCATCAGATTCTGattttttctctccattttcCTTCTGTCCATCATCTGGAGACTTCTGCTGATCTTCATccacctgcatttttttCTCTTCCTCCTTCTCTGCAGTCGGTGATGAAGTCTGCTCTGTATCCATAGGCTCCTCCCCCTCTTCAGGCTTCTGCAACTCCACTAGTGAGGCACTGGACACACTGAAGATCCCATGGATGTTAATCCTcacctttacttttactttagaaCTCTCGCCCGTGGCCTGGGGGACCACCTTCTGGATCATGTACTGTCCTATTGTGGGATCTGGGTAGGGCAGGTCTGTAGGACTGTTGTAGTACGCCTCCAAGGAGAACGGTTCTCTCCGGTAGAATGTTAGCACTTTGGAAAACGGAGCTGCGTGGTTCTTTGGGAACACCTCACAGTCACTTATGCCATCCTCTGCTGCAGAGTTCCATTTCAGAGAGATTGGGTAGGGAACAACATCAGTTATGGAAAACTCTCGGACTTTGAAGGCAGGAGACAAGATAGCACACTGAAGGGCACATCCTCTGGCCACAGCCTCATCTGCATTCAGGGTCATGCTCAGTTCCTTCCCAAAGAATTTGCTGATTCGCTCCTTAACTGCTGGTATTCTGGAAGCACCgcccacaatttccacagcgcAGATATCCTCATTCTTCAAATTGCTTGTTCCATTATACTGCGAAGAGGAGCCTCTACTCGAGCCAGAATGTCAGCACACATCTCTTCAAACTGACCTCTGTTCAGTTTTCCAGTAACATCAATGTCATTCATGAAGCACTCAATATTAAGTGGCAGATCGGAGGAATTTGCACTCATGAGTTTTTTGAGTTTCTCGCACTCCTGGTAAAGACGAACCAGAGCCCTTGGCTTGGACTTCACATCCAGCTTATACTTCTTCCCAAATTCCTCACAGAAATGGTTTACGAGGACCTCATCAAAGTCTTTGCCTCCCAAATGAGAGTCAAAGGCTGTAGCAAGAACCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU97066 lncRNA upstream 14545 7676392 ~ 7685337 (+) True G71932
TU97065 lncRNA upstream 24106 7675543 ~ 7675776 (+) True G71931
TU97062 lncRNA upstream 47019 7577710 ~ 7652863 (+) True G71928
TU97050 lncRNA upstream 172091 7527329 ~ 7527791 (+) True G71917
TU97043 lncRNA upstream 201612 7497778 ~ 7498270 (+) True G71910
TU97086 lncRNA downstream 21584 7733442 ~ 7736160 (+) True G71944
TU97143 lncRNA downstream 61983 7773841 ~ 7775533 (+) True G71985
TU97142 lncRNA downstream 62051 7773909 ~ 7775413 (+) False G71985
TU97144 lncRNA downstream 62051 7773909 ~ 7775533 (+) False G71985
TU97159 lncRNA downstream 149427 7861285 ~ 7861562 (+) True G72000
XM_007258578.3 mRNA upstream 25219 7671558 ~ 7674663 (+) True LOC103027348
XM_022672039.1 mRNA upstream 47392 7612712 ~ 7652490 (+) True LOC103027052
XM_007253574.3 mRNA upstream 487386 7206477 ~ 7212496 (+) True LOC103023202
XM_007253578.3 mRNA upstream 526334 7139036 ~ 7173548 (+) False LOC103023840
XM_007258573.3 mRNA downstream 8022 7719880 ~ 7725813 (+) True mars2
XM_022672043.1 mRNA downstream 728279 8440137 ~ 8641348 (+) True spock1
XM_022672044.1 mRNA downstream 962991 8674849 ~ 8687469 (+) True LOC103031395
XM_022672045.1 mRNA downstream 980092 8691950 ~ 8726635 (+) False LOC103028966
XM_007227994.3 mRNA downstream 980099 8691957 ~ 8726635 (+) True LOC103028966
TU96877 other upstream 814341 6881587 ~ 6885541 (+) True G71788
TU96736 other upstream 1161088 6525641 ~ 6538794 (+) True G71682
trnaa-agc_15 other upstream 1662134 6037676 ~ 6037748 (+) True trnaa-agc_15
trnaa-agc_14 other upstream 1663008 6036802 ~ 6036874 (+) True trnaa-agc_14
TU96351 other upstream 2194244 5499908 ~ 5505638 (+) True G71414
TU97487 other downstream 1431041 9142899 ~ 9149419 (+) True G72281
TU97933 other downstream 2366721 10078579 ~ 10082140 (+) True G72621
trnar-ucg_4 other downstream 4891494 12603352 ~ 12603424 (+) True trnar-ucg_4
XR_002650241.1 other downstream 5159626 12871484 ~ 12897931 (+) False LOC103043719
TU99159 other downstream 6936971 14648829 ~ 14649551 (+) True G73533

Expression Profile