RNA id: TU97172


Basic Information

Item Value
RNA id TU97172
length 499
lncRNA type inter_gene
GC content 0.43
exon number 2
gene id G72009
representative True

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 8041047 ~ 8041971 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

tagcaaccactttagaaatgatagcaactgcttagcaaccacttagcaaccatgtggaatatgttagcaactgcatagcaaccacttagcaaccactttagaaatgattgcaccagcctagcaaccacttagcaaccatgtggaatatgttagcaactgcctagcaaccacttagcaaccatgtggaatatgttagcaactgcctagcaaccacttagcaaccatgtggaatatgttagctactgcctagcaaccacttaggaaccatgtggaatatgttagcaactccctagcaaccacttagcaaccatgtggaatatgttagcaactgcctagcaaccacttagcaaccttGTGGAATATGTTATtatctgcctagcaaccacttagcaaccactttagaaattattgcaacagcctagcaaccacttagcaacaccttagcaaccaccttgaaaacgttagcaactgcctagcaaccacttagcaaccatgtgga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU97161 lncRNA upstream 156323 7867242 ~ 7884724 (+) True G72001
TU97159 lncRNA upstream 179485 7861285 ~ 7861562 (+) True G72000
TU97143 lncRNA upstream 265514 7773841 ~ 7775533 (+) True G71985
TU97144 lncRNA upstream 265514 7773909 ~ 7775533 (+) False G71985
TU97142 lncRNA upstream 265634 7773909 ~ 7775413 (+) False G71985
TU97175 lncRNA downstream 104658 8146629 ~ 8212203 (+) True G72011
TU97352 lncRNA downstream 343704 8385675 ~ 8386756 (+) True G72171
TU97356 lncRNA downstream 350290 8392261 ~ 8392477 (+) True G72175
TU97364 lncRNA downstream 359275 8401246 ~ 8401478 (+) True G72183
TU97373 lncRNA downstream 378093 8420064 ~ 8420305 (+) True G72192
XM_007258573.3 mRNA upstream 315234 7719880 ~ 7725813 (+) True mars2
XM_007258578.3 mRNA upstream 366384 7671558 ~ 7674663 (+) True LOC103027348
XM_022672039.1 mRNA upstream 388557 7612712 ~ 7652490 (+) True LOC103027052
XM_007253574.3 mRNA upstream 828551 7206477 ~ 7212496 (+) True LOC103023202
XM_022672033.1 mRNA upstream 867499 7139036 ~ 7173548 (+) False LOC103023840
XM_022672043.1 mRNA downstream 398166 8440137 ~ 8641348 (+) True spock1
XM_022672044.1 mRNA downstream 632878 8674849 ~ 8687469 (+) True LOC103031395
XM_022672045.1 mRNA downstream 649979 8691950 ~ 8726635 (+) False LOC103028966
XM_007227994.3 mRNA downstream 649986 8691957 ~ 8726635 (+) True LOC103028966
XM_022672046.1 mRNA downstream 650350 8692321 ~ 8726635 (+) False LOC103028966
TU96877 other upstream 1155506 6881587 ~ 6885541 (+) True G71788
TU96736 other upstream 1502253 6525641 ~ 6538794 (+) True G71682
trnaa-agc_15 other upstream 2003299 6037676 ~ 6037748 (+) True trnaa-agc_15
trnaa-agc_14 other upstream 2004173 6036802 ~ 6036874 (+) True trnaa-agc_14
TU96351 other upstream 2535409 5499908 ~ 5505638 (+) True G71414
TU97487 other downstream 1100928 9142899 ~ 9149419 (+) True G72281
TU97933 other downstream 2036608 10078579 ~ 10082140 (+) True G72621
trnar-ucg_4 other downstream 4561381 12603352 ~ 12603424 (+) True trnar-ucg_4
XR_002650241.1 other downstream 4829513 12871484 ~ 12897931 (+) False LOC103043719
TU99159 other downstream 6606858 14648829 ~ 14649551 (+) True G73533

Expression Profile