RNA id: TU97180


Basic Information

Item Value
RNA id TU97180
length 1547
lncRNA type sense_over
GC content 0.35
exon number 1
gene id LOC103030515
representative False

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 7773895 ~ 7842280 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

aaattgTAACGTAGCTTGAATTATACCATtagatttttgcaaaaaaaaaaaaaaaaggctctaTGTAGACAGGAATAGTTTCTCAAGGAGTCCTGGGatagttttctcttttatggggagtgctctgtgattttattatttccatCCGGattgaccatgtatgtgtttttctcagtcctcctcagagaaaattacaggctgacttatctactgtttttttactgaactctgtggtcctccggtaattttattcctgtctggacGGACATCTCtaagtttcgtctcctcacattaaataaaatagttaattttcCACTGTcttgcactgtaattacactttgggcgtgcgttACCACGGAGATCCGTGtaaaaatggaggagctactgaacacgataTCATGTGttcgagaaagccaaaaaactcactggtcctcctgttttttctacttaagtccagatgcaagagttttatcccTGAGTAGAAGTTTGAAATaattttcacagacgtccccctgagaaactattcttaggattaggattatcatgataatttgtttttttttattttaattcaaattgtcattggcaaaaagaaaaatcttaaaattttggataattgataaaaaaaacaattacttttttactatactaaatggaaaaataaataaggttTATATGCTGTTTTCAAATTTAGCCTCAAATGGTCAAAAAATTGAACAGATGCAGCAAAAGCTACACTGACCCCATTGAGTCTCATTCCATTGAAGTCAAGCACAACACTAGACAATCATGTATGTTCTGTTGGTttatgttctgttctgttctatgTTGTGCCTCTACTGTCTGTTAAAAGGTTCTGTGCAATCCGAGTTTATGTCAGTGATTAAGGCCTTCTGCAGTCCTGGGTCTTGCTTTACCTGAATCACGGCTGGAACTGTTTCTAACGTCACAATGTTCTGAAATGTTTGACGTTTTTTGTCGGCTTTGAGCTGCCACTGTCCTCACGTTGGGTTTCTAAATAGAGGAGCTTAAATGGCGTGATCCTCTTAATTGAGGATAAGGAAAGTCTATAGAGGCTTTCAGGAGAATTCAGCTGTTAGAAATTCTAATGAATCCTGTTATATATAGAAAAGGCCTGCCTCAGCTTTTCCACGTCATCTGTGACAGAGTGATGGAGACacttaattataaaaaagttactttttgaGAAGGATCGGTAcatgaatgtattttaaaatgtcaaagctacatcttcttcttcctctttgaAGTCTTTTATGttgattgtgtttgtgttgtacTACAATATGCAATAAGTTgagtaaatatactgtaagaGGACATATTCCTCTAATCTGCTCTGctgagttaaaaaaacaaagtccTCTGGAAGAAGCCTTGAATCAAGCTATGCATGTTTGAAGTTAAAATAAAGAGCTGTttgtattattaatgttatttagacctgtttctctgttggGCATAGACAGAAGCTTGCCTTGTTAATGACCTGAGATTGTATTATTTTGCTgttcaaaaagtttttt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU97123 lncRNA downstream 107343 7656662 ~ 7666552 (-) True G71975
TU97104 lncRNA downstream 219254 7551185 ~ 7554641 (-) True LOC103027657
TU97047 lncRNA downstream 252154 7521532 ~ 7521741 (-) True G71914
TU97044 lncRNA downstream 275412 7497781 ~ 7498483 (-) True G71911
TU97033 lncRNA downstream 430461 7343234 ~ 7343434 (-) True G71900
TU97187 lncRNA upstream 103238 7878679 ~ 7879316 (-) True G72022
TU97188 lncRNA upstream 149953 7925394 ~ 7929086 (-) True G72023
TU97286 lncRNA upstream 541210 8316651 ~ 8316977 (-) True G72118
TU97529 lncRNA upstream 600646 8376087 ~ 8376585 (-) True G72312
TU97532 lncRNA upstream 625427 8400868 ~ 8401244 (-) True G72315
XM_022671907.1 mRNA downstream 5534 7726618 ~ 7768361 (-) True med12
XM_007258574.3 mRNA downstream 54839 7699890 ~ 7719056 (-) True LOC103025952
XM_007258575.3 mRNA downstream 76987 7690185 ~ 7696908 (-) True LOC103026262
XM_007258577.3 mRNA downstream 88529 7676287 ~ 7685366 (-) True LOC103026574
XM_022672038.1 mRNA downstream 183341 7553456 ~ 7590554 (-) False LOC103027657
XM_022672042.1 mRNA upstream 91760 7867201 ~ 8174894 (-) False enox2
XM_022672041.1 mRNA upstream 91760 7867201 ~ 8174894 (-) False enox2
XM_007258567.3 mRNA upstream 91760 7867201 ~ 8156717 (-) True enox2
XM_007227997.3 mRNA upstream 959636 8735077 ~ 8758128 (-) True LOC103029481
XM_007227996.3 mRNA upstream 959637 8735078 ~ 8758126 (-) False LOC103029481
TU96981 other downstream 460969 7309775 ~ 7312926 (-) True G71862
TU96917 other downstream 716252 7057110 ~ 7057643 (-) True G71826
TU96859 other downstream 949139 6777239 ~ 6824756 (-) True G71771
TU96529 other downstream 1932208 5829621 ~ 5841687 (-) True LOC103035656
TU96400 other downstream 2297520 5471666 ~ 5476375 (-) True G71458
TU97555 other upstream 864097 8639538 ~ 8645601 (-) True G72336
TU97699 other upstream 1390437 9165878 ~ 9174309 (-) True G72449
TU97707 other upstream 1447251 9222692 ~ 9225559 (-) True G72453
TU98300 other upstream 3745446 11520887 ~ 11545223 (-) False LOC111193052
TU98292 other upstream 3745571 11521012 ~ 11545136 (-) False LOC111193052

Expression Profile