RNA id: TU97373


Basic Information

Item Value
RNA id TU97373
length 242
lncRNA type inter_gene
GC content 0.43
exon number 1
gene id G72192
representative True

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 8420064 ~ 8420305 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

gcaaaactggtcttgctctctctgggtgggtagatggtgctctttttcCACATCACTCCCAAGTTGATGTGGGtcagcacaggcttctgttggctgatgtaacAGAGCTGATTCTCTGCGCTTTCTCCAGAAATATaatacttaacccttgtgtggtgttcgggtctgtgggacccgttttcatttttcatcaaatgatactaaaaaaatattttttctaactcaaactcattggcattggc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU97364 lncRNA upstream 18586 8401246 ~ 8401478 (+) True G72183
TU97356 lncRNA upstream 27587 8392261 ~ 8392477 (+) True G72175
TU97352 lncRNA upstream 33308 8385675 ~ 8386756 (+) True G72171
TU97175 lncRNA upstream 207861 8146629 ~ 8212203 (+) True G72011
TU97172 lncRNA upstream 378093 8041047 ~ 8041971 (+) True G72009
TU97383 lncRNA downstream 17565 8437870 ~ 8438095 (+) True G72202
TU97390 lncRNA downstream 63618 8483923 ~ 8484763 (+) True G72209
XR_002650234.1 lncRNA downstream 364267 8784572 ~ 8793176 (+) True LOC111193079
TU97464 lncRNA downstream 535050 8955355 ~ 9036026 (+) False LOC103030246
TU97484 lncRNA downstream 669571 9089876 ~ 9090618 (+) True G72278
XM_007258573.3 mRNA upstream 694251 7719880 ~ 7725813 (+) True mars2
XM_007258578.3 mRNA upstream 745401 7671558 ~ 7674663 (+) True LOC103027348
XM_022672039.1 mRNA upstream 767574 7612712 ~ 7652490 (+) True LOC103027052
XM_007253574.3 mRNA upstream 1207568 7206477 ~ 7212496 (+) True LOC103023202
XM_022672033.1 mRNA upstream 1246516 7139036 ~ 7173548 (+) False LOC103023840
XM_022672043.1 mRNA downstream 19832 8440137 ~ 8641348 (+) True spock1
XM_022672044.1 mRNA downstream 254544 8674849 ~ 8687469 (+) True LOC103031395
XM_022672045.1 mRNA downstream 271645 8691950 ~ 8726635 (+) False LOC103028966
XM_007227994.3 mRNA downstream 271652 8691957 ~ 8726635 (+) True LOC103028966
XM_022672046.1 mRNA downstream 272016 8692321 ~ 8726635 (+) False LOC103028966
TU96877 other upstream 1534523 6881587 ~ 6885541 (+) True G71788
TU96736 other upstream 1881270 6525641 ~ 6538794 (+) True G71682
trnaa-agc_15 other upstream 2382316 6037676 ~ 6037748 (+) True trnaa-agc_15
trnaa-agc_14 other upstream 2383190 6036802 ~ 6036874 (+) True trnaa-agc_14
TU96351 other upstream 2914426 5499908 ~ 5505638 (+) True G71414
TU97487 other downstream 722594 9142899 ~ 9149419 (+) True G72281
TU97933 other downstream 1658274 10078579 ~ 10082140 (+) True G72621
trnar-ucg_4 other downstream 4183047 12603352 ~ 12603424 (+) True trnar-ucg_4
XR_002650241.1 other downstream 4451179 12871484 ~ 12897931 (+) False LOC103043719
TU99159 other downstream 6228524 14648829 ~ 14649551 (+) True G73533

Expression Profile