RNA id: XM_022672047.1


Basic Information

Item Value
RNA id XM_022672047.1
length 6462
RNA type mRNA
GC content 0.46
exon number 4
gene id LOC103030246
representative True

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 8869128 ~ 9036026 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

agagagagagagagagagagagagagagagagaaaagaagagaggaagCGTTAGGCAGTACCCGTGTCAGGGGAAACAAGGACCAGCCTCGCggtaaaaagaaggaaaaaaggaagaagtGTAAGGACAAAGGACAGAACATGGAGGGAGCAGGAAAATGTCCGTTTAACGAGGCAGCGGAGAGGAGATTCTGGTCGTCCAGCACATAGCCAAGGTACAACGGACAGCTCCCCACCTTTTTTTAACCCCCTCTTTTTTGTGGCTTTTTGATGCCGTGGCGCAAGCAATCGCACAGCAAGCTCGAAAGAcggaaacattttttaatccGTCTGCAGATTGTGCCAGCTTGCGATGGCTGTTGAGGGGCGATGCAGAAGCACAAAGGATAACGCGcctctttgtttttatttcgtCGTCGTTTTTGTACTCAGTGGCCTTACAAATGCACAAATTCGCTACACGATTCCAGAAGAGCTGGAGACCGGGGCTGTGGTTGGGGACATCGTCCGAGATTTAGGACTTGACCTGCGAACGCTTTCGGCTCGACGTATCAGAATAAGCTCGGACAGCGCCAGGCGCTACTTTAACATCAACCACAAAACTGGTAAGCTTTTGGTCAGTGACCGGATCGACCGTGAGACCCTCTGCGAGTTCAGAGACGCCTGCCTTCTTAACCTCGAGGTGGTCGTGGAAAATCCCCTAGAGGTGCACAACGTGGAGGTGGAGATCTTGGACGCAAACGACAACGCGCCCCTTTTCCCCCGAGACGAGTACCAGCTGGAGATCTCTGAGGCGGCTAAACCTGGCGCGCGGTTCCCCATCGAGGGCGCGCAGGACTCGGATGATGCCTCGAATTCAGTGCGCCATTATCGCCTCTCGACAAACGAGCACCTCGCGCTGGACTCAAATAAGCCACCTGCTAATGGAAAGCACATTGAACTCGTTCTAAAAAAGCCGTTCGATCGCGAACTGGTGCCATCTCATCAGCTCGTGCTCACAGCCACGGACGGTGGCTCTCCTCCGCGCTCTGGCACAGCCAAAATCAATGTGCGTGTTTTGGACACCAACGACAACGTGCCCAAGTTCGACAGCTCTGTGTACAAAGTGAAACTGAGAGAGAATTCGCCTATTGGCGCTCTGGTGATCAAACTTAATGCAACTGATCGGGACGAGGGCACCAATGGAGATGTTTATTACTCCTTCAGTTCATACACACCTGAAAGGGTTCGACAGATGTTCAGCATGGACACAGATACTGGAGAGATTCGAGTCAAAAGTAACGTGGACTTTGAGGAGACCAACAGTTACGAAATGTACATCCAGGCTATGGACCGGGGCCATGGGGCAGTTGCAGTGCACTGTAAAGTAGTGGTTGAGGTTCTGGATGTAAATGATAACCCACCTGATATTGTGCTCTCCACTCTCTCTAGCCCAGTGAGGGAGGATGCTCGAGCTGACACTGTGGTGGCCCTGATCAGTGTCAATGACCGTGACTCTGGCCAAAACAAACAAGTCACCTTAGATATCATTCCCCCCAACCTGCCTTTTAAGATAAAATCATTCAGGAACCACTACACCATTGTCACCTCAGCCTTTCTGGACAGAGAAGCAGTATCCTCATACAATGTTACAATCACTGCAGTTGACGGAGGAACTCCAGCTCTCTCCTCATCCATGGTCATACGTGTTGAAGTGGCGGATGTAAATGACAATCCGCCTCGATTTGAGCAAACATCTTACACTGTCTATGTCACTGAAAACAATGCTCCAAGTGCTCCTTTGTGTGTCGTCAAAGCCACAGATCCTGATGCCAATGAAAATGCACGCATCACTTACACTGTCTTGAATGACAACAACCATGGGATCTCAGTGGCATCATATGTTTCCATCAAACCTGCCACAGGTGAGGTGTATGCCCTGCGCTCTTTTGACTTTGAGAAGCTGCGAGAGTTCCACTTCCAGGTGAAAGCTCAAGACAACGGTGTACCTCCCTTAAGTCGCGTGGCAACTATCTACGTTTACGTCATGGACTCCAATGACCATGCCCCACGGTTTGTCCACCCAGCATCAAATGTGTCACACACAGTGGAAACAATCCTCCGGAATGCAGAGGCAGGTGTCCTGGTAACACGTGCACTGGCATGGGATGGGGATGCAGGACAAAATGCCTGGCTGCTGTATGCACTCGAACACCCTGCTGAGCTTGACTTGTTTAAGGTGCATGAGCACACAGGTGAGATCCGAACCACACGACGTGTTTATGAAGACAACTCTACTGTCTTCAGCCTTACAGTGCATGTAAGAGATCATGGCCTGCCACCACGTTCTGCCTCTGCCACCATTAATGTGGCTGTCATGGAACTGCCACCAAAAGTGGCACCTGATCCCAAACGCATCATCAGGCCTCATGGCACTCTTATCTTCTCCAATGTTACACTATACCTCATTGTTGCCCTCACTGCCACCACCTTCGTCTTCCTGGTCACTGTCTTTGTTTTAGCCATTGTGCGCTGCCATGCCTACTGCAGCCAACCTGATGCATGTTCCTGCTCACCTTGCTGTGGAACTAAAAAGAAGAAGCCTCCCAAAGAAGGTGGCGGTGGcgggggagggggtggaggtggtggggcctcaggtggaggtggaggaggaggaggaggaggaggaggaggtggagtaaACCAGCAACAACAGGCTGTGGCCCTAAGGAGGGACCTTAAAGTAGAACCTCACTACATTGAGGTCAGAGGAAATGGCTCTTTGACCAAAACCTATTGCTACAAGACCTGCCTAACAGCCACTTCAGGAAGTGACACATTCATGTTCTACAACACAGGCCGGCCACTGAGCGGGACCTGGGGCTCAGGGGCTGAGCGATTCTTCACAAGCCAGAGTGGACAGTTTGTGCGAAGGCTTAGTATGCCCGATGCCACAGCCATACAGCCCAAGGCTCCCAATGCAGATTGGAGATACTCGGCTTCACTTAGAGCAGGAATGCAAAGCTCTGTCCATATGGAAGAGTCCTCGGTGATGCAGGGGGCCCAGGGAGTTCTGGTGCAGAATTGGCCCACCGTCTCCAGTGCTGCTGATAATGAAGGTGGGGAAGTGTCTCCTCCCGTAGGCGCTGGTGTGGACAGTAACAGCTGGCATTTCCGGTACGGCCCAGGCCCTGGCGGACCCCCTCCTCATCTAAAGCCTGGCGAAGTCCCACCTGAAGCCTTCATCATCCCTGGCTCACCTGCCATCATCTCTATCAGACAAGGGCAGGATGGCGATGACAAGAGTGACTTCATCACCTTTGGCAAGAAGGAGGaggccaaaaagaaaaaaaagaagaagaaggagaagaaggacaAGAGGGATAAAGGGAAAGATGATGATGAGTAGGAAGGGAAAGGAAGAGGTTACAAAAttgtgtgtgtaagacagaGATTTCAACAGGAGTCTGCAATGATTCAAAcagcaaatatttaattttgtgtctGCAAGAAGCCTCTAATTAAGATCTTTAGACTGGTTTCATGTATAATTCTATTAGATTTGGCCTTACACAGATTACTGTCAACCACATTCTCTTTGATGACGTAACTGATGATTTGATATGATGGATTAATTTTGTTCTTGCCTCACAGTGCCTAGCCATCCAGTCCTCTAAGCGTTCGGGTGTgggtgcgtgtgtgtttgtgtgtgtgagagagagagagagagagagagaaatagaaacaaatagagagatagagagagactaAGGGAAAAGGCACACAATATTAGACAGACAGGGTTATTGTCACTCCACCCCCTTTCTTGTTCAGGCTGCTGTTGACACCTCTGTCTTATGCTTCCACGTGGTTCTTGTTTTCCAATCTTATCAGAGAGGGAGGCAAaatcagatataaaaaaaaaagttcaaaagcaGTGCACCACATACCAAGTTATGACTGAGAAAAGGATGAACAAAAAATGACAGTGGAGGAAAAGCAAAGCAGTAGGAAAGAAAAGTAGTTTTGGAATTAAAAGGAAAGCTTTGAGACCTGGAAGTGGGACATGCACTAGTGTAAATATGGCAGCAATGGAAGAGAGCACCCGCCATGCTGTACAGTAAAATGCAGTGACAACGCTAAACAAATGCTTCTGCTCACTCTGTTCTCTATCCATGTGTCCACAACGGAGGAGCATCTCAGATGaacaaagagagacaaagaacgCTTTCACCTGAGACTCTTCAAAAGAACGAAAGTTAAAAGAGACCAGTTTGCGGGAGAGAGTAATAGTGGTCTGTGTTCAcgcaaaatgaaagaaaaacactgctaAATGTTGAAATGCAAgcacattttgttttgtttaatactgTTTTGTTACTTGCGCTCTCTCCCAGCAATTGTATAGGTGTACtatctgaaaatgtaaattgATTCCCcagccatacacacacacacactctcatactcACATACATCTTAAACAGGGTCAGAAATCAGCACTCTGCTACCAACAGCACTCTTCTCCCCCCAGCAGCATGATTACCCTTCTTTGTTTTTCAAGAGAAGTAGCTGTGCCTTGGAATAGCAAATTGCTGAACAGGGCAAAACTGGGGGAAACTTCTTCAGGAAGAGACAGAGTGTGGAATTCAACAGGAAACTCTTGGACTTGAAAAAATGGACAAAGCTGCTGATTAGCAAGAGGGATGCTTTGGTTGCATCTCTTCTTTTCACTAGGGGTTAAGCTATGTAGGCAGCAGAGAATTTGattctacaaaaaaatgtagataGCTAGAAATGAATACTTAGGTGCATAGATGACCTGAGTGAACAGTACATCTAAAGAACAGTGTTGGCACGGATGAACAAAACTTACAACCCTTATCACTCTTGTACCCTGAAAACTTCCCTTTTCTGGCAGTGGCCTGAAGCTTACGCTGTGAATGTCTGGTATCGCTGCccatatattatacaatattttcttttatttcaacctgttttttttttgttgtcgtTTGTTTGACTATTTGTTCGTTTTTCCCTGTGCCTGCTTCCTTATTAATCTGAGGGTGCAGTGTGTGGATCTTGTCCTGTACAAAGTAACCCTGACTTTCTCTGCCTGGAGGACTAACACACACATCAGCACAATCAAATAACaaattttgtctgatttttcagtttttgttgaAGTGGAAACAAGGGCAGTGTTTACTCTTTAAACTCTGTTTTTATGAGCTTTAACTAATCTATATTGCATCTGTACAGTGCATATTTTGTTCTCTTAGCTCTCTTGCTCTCTGAGTGTCTCTGCCGTGGGTTTATCCTCTGTTCTATCTGAATGTTGGGTAGGCTAGCTCTAGTCATTGTGGTGTGCTCGCGTAGCATGGAGTAATGCAGCTAATGCCTGTAAAATCTCCCCTGCAGAGAACAGAGACAGCTCTGAGAGCTCTGTCAGATATGTACACAGTCTAGTGCTTTTATTCAGTGAATATCACTCCTCTATGGGTGTCTGTGCGGGCGTGTGTAAGAAAGAGTGTATGTTctgatgtgtgtctgtgtgtgtgaccaGTGAACACACTTCTGGCTGCTGGTTCTTCACCGCTTGTGTTTGTTGAGGGGGAGGGGAGAAAATGGAGGGGAGGGGACACCGCATGGTCAAGAGATGGAGTTTGCCTGGAGCTGGTGATGATCTGGAtggaaataaatactaaatagtCAGCTCTACTGATTAAACACACAAATCTGTAGTTTAGTCTTTGTATAGTCACATTGCTTTGAGTTGGAAATTGGCCTGAGAAGATCACTGGAGTTAGTTCGGTGCAAATGTATCAGTTGGAATAGATAAATCTTCTCCAGATCAAAATCCAATCTCTGAACCAATGCTTTTCAGTGGCAGTGAAGTGATACACTTATACTCTGCTACTACTGTCTCCAGCCTGCCTTCTACCCCACAGCCACACCCCCAAACCCATGGCTAAATCTGATGTCACGTTCGCTCAGCTGTGACTGCTGCATGACCTAATCAGAGGGAAACACTTactatatagagatatatatgaatatagatatagattgctatgattttactatttttgtttatgatttttatCCATTACTCACACAAGAGATTTGTGTATGTACTGTCTCTGCTAAGCCTTTGCATATTGACACCCTCTGCACCCACTCACAATGGACATCTACAATGTAACTAAACCTTCTAGATATTTGTAAATGCTAAATAGTGTGATGCCCTGAAGCTCTTGATCAgtcctttcctttcttttcgCTTTTGTTTTTGAGAACTTAAGgagaggggggaaaaaacaacaaaaaaatatatatatcacttttgTGTCTGGCTTCAACATACTGATCTAACACTGTATTACTGTAACTGAATTATTATGTATTACAGCTCTATCTCTTCTCTTTCACCcctttgaaaaataaaaaaataagcttcaagaaaatgtaaaaaaaaaaa

Function

GO:

id name namespace
GO:0007156 homophilic cell adhesion via plasma membrane adhesion molecules biological_process
GO:0005886 plasma membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005509 calcium ion binding molecular_function

KEGG:

id description
K16493 PCDHA; protocadherin alpha

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_002650234.1 lncRNA upstream 216983 8784572 ~ 8793176 (+) True LOC111193079
TU97390 lncRNA upstream 525396 8483923 ~ 8484763 (+) True G72209
TU97383 lncRNA upstream 572064 8437870 ~ 8438095 (+) True G72202
TU97373 lncRNA upstream 589854 8420064 ~ 8420305 (+) True G72192
TU97364 lncRNA upstream 608681 8401246 ~ 8401478 (+) True G72183
TU97484 lncRNA downstream 54115 9089876 ~ 9090618 (+) True G72278
TU97469 lncRNA downstream 106601 9142362 ~ 9151966 (+) True G72263
TU97492 lncRNA downstream 191754 9227515 ~ 9227886 (+) True G72285
TU97515 lncRNA downstream 556546 9592307 ~ 9639931 (+) True G72305
TU97519 lncRNA downstream 562188 9597949 ~ 9651534 (+) False G72306
XM_022672076.1 mRNA upstream 36753 8970578 ~ 8973406 (+) True LOC111193080
XM_022672065.1 mRNA upstream 48331 8958444 ~ 8961828 (+) True LOC103029169
XM_022672078.1 mRNA upstream 79918 8927031 ~ 8930241 (+) True LOC111193082
XM_022672080.1 mRNA upstream 106065 8902284 ~ 8904094 (+) True LOC111193084
XM_022672077.1 mRNA upstream 113341 8894211 ~ 8896818 (+) True LOC111193081
XM_022672090.1 mRNA downstream 56462 9092223 ~ 9093477 (+) True LOC107197811
XM_015608816.2 mRNA downstream 61618 9097379 ~ 9100230 (+) True LOC103033622
XM_022672086.1 mRNA downstream 84769 9120530 ~ 9122791 (+) True LOC111193087
XM_022672085.1 mRNA downstream 91546 9127307 ~ 9130230 (+) True LOC103033934
XM_022671909.1 mRNA downstream 98688 9134449 ~ 9153260 (+) True LOC111193051
TU96877 other upstream 2124618 6881587 ~ 6885541 (+) True G71788
TU96736 other upstream 2471365 6525641 ~ 6538794 (+) True G71682
trnaa-agc_15 other upstream 2972411 6037676 ~ 6037748 (+) True trnaa-agc_15
trnaa-agc_14 other upstream 2973285 6036802 ~ 6036874 (+) True trnaa-agc_14
TU96351 other upstream 3504521 5499908 ~ 5505638 (+) True G71414
TU97487 other downstream 107138 9142899 ~ 9149419 (+) True G72281
TU97933 other downstream 1042818 10078579 ~ 10082140 (+) True G72621
trnar-ucg_4 other downstream 3567591 12603352 ~ 12603424 (+) True trnar-ucg_4
XR_002650241.1 other downstream 3835723 12871484 ~ 12897931 (+) False LOC103043719
TU99159 other downstream 5613068 14648829 ~ 14649551 (+) True G73533

Expression Profile