RNA id: XM_022672061.1


Basic Information

Item Value
RNA id XM_022672061.1
length 6007
RNA type mRNA
GC content 0.41
exon number 5
gene id LOC103030246
representative False

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 8869128 ~ 9036026 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

AAGTATCTTGAGGCAATTCAGAGGTTGCCTCATATGTCGTTTATTTGTTGTACATAAGGCGTCTTGTGTTCTACACAACTGGTATACGTAGATTATTAGTAATAATTCGTTGAAACGCAATTGTTCTACCcataaaatggaacaaaaagGACGCGCATCATGGAGGAAGGCGCTGATGGCTTTTTTGCTGCTGTTTGGAAGAGCGGTTTCCGCACATATACGATATTCCGTTTTCGAAGAGCAGAAGCTTGGCACACTGATCGGAAATATAGCAAAGGATTTAGGAATTGATCAAAGAGTTTTACAAGATAGAGGATTTCGGATTGTGTCGACAACAGGAGAGTCGCTGTTCAAGGTAAATAATGATGGAGGGCTGTATGTATATGGAAAAATAGACAGAGAAGAGGTTTGCAAGAAAAGCAGCACTTGttttataaatttaaaaatcGCTCTtgaaaatccactggagattcATTATGTAGCAGTAGACATTCTGGATATGAACGACCATGCACCAACATTCAACCAAAATGAAAAACGATTAGAAATATGGGAATCAGCATTACCTGGTGCTCGATTTCAGCTCCAGGCCGCCCAGGACCCTGACAGCGGGagcaattcaattcaaaattaTAGACTGAGTCACAACGATCATTTTCGGCTAGAAGTCAAGGATCGTGACGACGATGGTAAAATTCCCCTATTGTTATTACAAAAACCATTAGACAGAGAGATAACAAagaaaattaaactgataaTAACTGCTGTAGATGGTGGGAAACCACCAAGATCTGGAACAATGGCGATAAACGTAGATGTGTTAGATATAAATGATAATGCTCCTGTTTTTACTAAAGATATTTATACTGTCATGGTGAATGAAAACGTTCCAAAAGGTTCGATTGTAGTGCAGGTGAACGCTACAGATTCAGATGAGGGCTTAAATGGCGAGATCGTCTATTCCATGAGCAataatatcaacaataaaattcaAGACCTTTTTGAAATAAATCAGATCACCGGAGACATTATTGTGAAAGGATTATTAGATTTTGAAGTTAAAGACAAATACGAGATAGATATACAAGCATCAGATAAAGGACTTGTACCAATGACATCAGATAAAAGTGTAACTATAAAGATTGTTGATTTAAACGATAATAATCCAGAAATTGAGGTGACGTCGTTTACGAGAGAAATCCCAGAAGATTCCAGATCTGGCACAACTGTTGCTTTGATAAGTGTCTCTGATTCAGACTCCGGAATGAACGGAAAAGTATTATGTTCAGTCCCCGAAAACATACCTTTCAAACTAATGCCATCATCCCATGAAAATGTTTACTCATTAGTCACAGAATCATCGCTTGACAGGGAAACTACAGTTCAGTATGATATTACAATACTCGCAAAAGACACAGGAGTGCCGCCCTTGTCCTCAGTGAAGACTATAACTGTTAAAGTTTCAGATGTGAATGACAACAGCCCTCAGTTTTCTCTTTCTGCTTACACGTTTTACGTGATGGAGAACAATATTCCAGGCACGTCTTTATTTTCTGTGACTGCTTCTGACCGGGATTCAAATGAAAATGCAATTGTCAGTTATCATATTTGGAGAGAAAATGATGATGGAAATGCATACGCCTCATTTATCAATATTAATTCGGAAAACGGAGAGATTTACGCGCTGAGAAACTTTGACTTTGAATTAGTTAAAACCTTCCAATTCAAAGTCACTGCAAGAGATTCTGGAACTCCACCACTGAACAGCAACGTCACGGTGAACGTCTTCATTCTGGATCAGAACGACAATGTTCCAGTGATCTTGTATCCAGTCAGTTCTAATGGATCTGCTGAAGGAGTGGAGGAGATTCCCCGCAATGTGAACGCAGGACATTTGGTGACCAAAGTGAGAGCCTATGATGCAGATATAGGATACAACGGCTGGTTATTATTTTCACTACAGGAAGTGAGTGACCACAGTCTATTTGGTTTGGACCGctatactggacagataaggACCCTCCGCTCATTCACAGAAACTGATGAAGCTCTGCATAaactggtcatactggtcaaagACAATGGTAATGTGTCACTTTCAACAACAGCGACTGTAATTATCAAAGTTGTGGAGCCGAAAGAAGCTTTTGCAGCGTCGGATGTTAAAAACACCGTTAAAGATGAAGAGGACAGCAACATTTCCCTTTATCTGATCATCACTTTGGGCTCTGTTTCAGTACTTTTTGTAATTAGCATCGTTGTGTTGATTATAATGCAATGCTCTAAATCTACAGACTGTTCCTCAAAGTACTTACAAGATACAAATTATGATGGGACACTGTGCCACAGCATCCAGTACAGATCAGGAGATAAACGCTACATGCTGGTTGGACCCAGAATGAGTATCGGTTCTACAATAACCCCTGGCAGTAATACTCTAGTCGTCCAAGATCGCAGAAGGGGATCTTCTGGAGAgAGCACTCTAAAGCCCAAGGCTCCCAATGCAGATTGGAGATACTCGGCTTCACTTAGAGCAGGAATGCAAAGCTCTGTCCATATGGAAGAGTCCTCGGTGATGCAGGGGGCCCAGGGAGTTCTGGTGCAGAATTGGCCCACCGTCTCCAGTGCTGCTGATAATGAAGGTGGGGAAGTGTCTCCTCCCGTAGGCGCTGGTGTGGACAGTAACAGCTGGCATTTCCGGTACGGCCCAGGCCCTGGCGGACCCCCTCCTCATCTAAAGCCTGGCGAAGTCCCACCTGAAGCCTTCATCATCCCTGGCTCACCTGCCATCATCTCTATCAGACAAGGGCAGGATGGCGATGACAAGAGTGACTTCATCACCTTTGGCAAGAAGGAGGaggccaaaaagaaaaaaaagaagaagaaggagaagaaggacaAGAGGGATAAAGGGAAAGATGATGATGAGTAGGAAGGGAAAGGAAGAGGTTACAAAAttgtgtgtgtaagacagaGATTTCAACAGGAGTCTGCAATGATTCAAAcagcaaatatttaattttgtgtctGCAAGAAGCCTCTAATTAAGATCTTTAGACTGGTTTCATGTATAATTCTATTAGATTTGGCCTTACACAGATTACTGTCAACCACATTCTCTTTGATGACGTAACTGATGATTTGATATGATGGATTAATTTTGTTCTTGCCTCACAGTGCCTAGCCATCCAGTCCTCTAAGCGTTCGGGTGTgggtgcgtgtgtgtttgtgtgtgtgagagagagagagagagagagagaaatagaaacaaatagagagatagagagagactaAGGGAAAAGGCACACAATATTAGACAGACAGGGTTATTGTCACTCCACCCCCTTTCTTGTTCAGGCTGCTGTTGACACCTCTGTCTTATGCTTCCACGTGGTTCTTGTTTTCCAATCTTATCAGAGAGGGAGGCAAaatcagatataaaaaaaaaagttcaaaagcaGTGCACCACATACCAAGTTATGACTGAGAAAAGGATGAACAAAAAATGACAGTGGAGGAAAAGCAAAGCAGTAGGAAAGAAAAGTAGTTTTGGAATTAAAAGGAAAGCTTTGAGACCTGGAAGTGGGACATGCACTAGTGTAAATATGGCAGCAATGGAAGAGAGCACCCGCCATGCTGTACAGTAAAATGCAGTGACAACGCTAAACAAATGCTTCTGCTCACTCTGTTCTCTATCCATGTGTCCACAACGGAGGAGCATCTCAGATGaacaaagagagacaaagaacgCTTTCACCTGAGACTCTTCAAAAGAACGAAAGTTAAAAGAGACCAGTTTGCGGGAGAGAGTAATAGTGGTCTGTGTTCAcgcaaaatgaaagaaaaacactgctaAATGTTGAAATGCAAgcacattttgttttgtttaatactgTTTTGTTACTTGCGCTCTCTCCCAGCAATTGTATAGGTGTACtatctgaaaatgtaaattgATTCCCcagccatacacacacacacactctcatactcACATACATCTTAAACAGGGTCAGAAATCAGCACTCTGCTACCAACAGCACTCTTCTCCCCCCAGCAGCATGATTACCCTTCTTTGTTTTTCAAGAGAAGTAGCTGTGCCTTGGAATAGCAAATTGCTGAACAGGGCAAAACTGGGGGAAACTTCTTCAGGAAGAGACAGAGTGTGGAATTCAACAGGAAACTCTTGGACTTGAAAAAATGGACAAAGCTGCTGATTAGCAAGAGGGATGCTTTGGTTGCATCTCTTCTTTTCACTAGGGGTTAAGCTATGTAGGCAGCAGAGAATTTGattctacaaaaaaatgtagataGCTAGAAATGAATACTTAGGTGCATAGATGACCTGAGTGAACAGTACATCTAAAGAACAGTGTTGGCACGGATGAACAAAACTTACAACCCTTATCACTCTTGTACCCTGAAAACTTCCCTTTTCTGGCAGTGGCCTGAAGCTTACGCTGTGAATGTCTGGTATCGCTGCccatatattatacaatattttcttttatttcaacctgttttttttttgttgtcgtTTGTTTGACTATTTGTTCGTTTTTCCCTGTGCCTGCTTCCTTATTAATCTGAGGGTGCAGTGTGTGGATCTTGTCCTGTACAAAGTAACCCTGACTTTCTCTGCCTGGAGGACTAACACACACATCAGCACAATCAAATAACaaattttgtctgatttttcagtttttgttgaAGTGGAAACAAGGGCAGTGTTTACTCTTTAAACTCTGTTTTTATGAGCTTTAACTAATCTATATTGCATCTGTACAGTGCATATTTTGTTCTCTTAGCTCTCTTGCTCTCTGAGTGTCTCTGCCGTGGGTTTATCCTCTGTTCTATCTGAATGTTGGGTAGGCTAGCTCTAGTCATTGTGGTGTGCTCGCGTAGCATGGAGTAATGCAGCTAATGCCTGTAAAATCTCCCCTGCAGAGAACAGAGACAGCTCTGAGAGCTCTGTCAGATATGTACACAGTCTAGTGCTTTTATTCAGTGAATATCACTCCTCTATGGGTGTCTGTGCGGGCGTGTGTAAGAAAGAGTGTATGTTctgatgtgtgtctgtgtgtgtgaccaGTGAACACACTTCTGGCTGCTGGTTCTTCACCGCTTGTGTTTGTTGAGGGGGAGGGGAGAAAATGGAGGGGAGGGGACACCGCATGGTCAAGAGATGGAGTTTGCCTGGAGCTGGTGATGATCTGGAtggaaataaatactaaatagtCAGCTCTACTGATTAAACACACAAATCTGTAGTTTAGTCTTTGTATAGTCACATTGCTTTGAGTTGGAAATTGGCCTGAGAAGATCACTGGAGTTAGTTCGGTGCAAATGTATCAGTTGGAATAGATAAATCTTCTCCAGATCAAAATCCAATCTCTGAACCAATGCTTTTCAGTGGCAGTGAAGTGATACACTTATACTCTGCTACTACTGTCTCCAGCCTGCCTTCTACCCCACAGCCACACCCCCAAACCCATGGCTAAATCTGATGTCACGTTCGCTCAGCTGTGACTGCTGCATGACCTAATCAGAGGGAAACACTTactatatagagatatatatgaatatagatatagattgctatgattttactatttttgtttatgatttttatCCATTACTCACACAAGAGATTTGTGTATGTACTGTCTCTGCTAAGCCTTTGCATATTGACACCCTCTGCACCCACTCACAATGGACATCTACAATGTAACTAAACCTTCTAGATATTTGTAAATGCTAAATAGTGTGATGCCCTGAAGCTCTTGATCAgtcctttcctttcttttcgCTTTTGTTTTTGAGAACTTAAGgagaggggggaaaaaacaacaaaaaaatatatatatcacttttgTGTCTGGCTTCAACATACTGATCTAACACTGTATTACTGTAACTGAATTATTATGTATTACAGCTCTATCTCTTCTCTTTCACCcctttgaaaaataaaaaaataagcttcaagaaaatgtaaaaaaaaaaa

Function

GO:

id name namespace
GO:0007156 homophilic cell adhesion via plasma membrane adhesion molecules biological_process
GO:0005886 plasma membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005509 calcium ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_002650234.1 lncRNA upstream 105932 8784572 ~ 8793176 (+) True LOC111193079
TU97390 lncRNA upstream 414345 8483923 ~ 8484763 (+) True G72209
TU97383 lncRNA upstream 461013 8437870 ~ 8438095 (+) True G72202
TU97373 lncRNA upstream 478803 8420064 ~ 8420305 (+) True G72192
TU97364 lncRNA upstream 497630 8401246 ~ 8401478 (+) True G72183
TU97484 lncRNA downstream 54115 9089876 ~ 9090618 (+) True G72278
TU97469 lncRNA downstream 106601 9142362 ~ 9151966 (+) True G72263
TU97492 lncRNA downstream 191754 9227515 ~ 9227886 (+) True G72285
TU97515 lncRNA downstream 556546 9592307 ~ 9639931 (+) True G72305
TU97519 lncRNA downstream 562188 9597949 ~ 9651534 (+) False G72306
XM_022672077.1 mRNA upstream 2290 8894211 ~ 8896818 (+) True LOC111193081
XM_022672079.1 mRNA upstream 14920 8881863 ~ 8884188 (+) True LOC111193083
XM_022672081.1 mRNA upstream 25451 8872650 ~ 8873657 (+) True LOC111193085
XM_022671908.1 mRNA upstream 30153 8862120 ~ 8868955 (+) True LOC111193048
XM_022672069.1 mRNA upstream 41592 8844403 ~ 8857516 (+) False LOC103031822
XM_022672090.1 mRNA downstream 56462 9092223 ~ 9093477 (+) True LOC107197811
XM_015608816.2 mRNA downstream 61618 9097379 ~ 9100230 (+) True LOC103033622
XM_022672086.1 mRNA downstream 84769 9120530 ~ 9122791 (+) True LOC111193087
XM_022672085.1 mRNA downstream 91546 9127307 ~ 9130230 (+) True LOC103033934
XM_022671909.1 mRNA downstream 98688 9134449 ~ 9153260 (+) True LOC111193051
TU96877 other upstream 2013567 6881587 ~ 6885541 (+) True G71788
TU96736 other upstream 2360314 6525641 ~ 6538794 (+) True G71682
trnaa-agc_15 other upstream 2861360 6037676 ~ 6037748 (+) True trnaa-agc_15
trnaa-agc_14 other upstream 2862234 6036802 ~ 6036874 (+) True trnaa-agc_14
TU96351 other upstream 3393470 5499908 ~ 5505638 (+) True G71414
TU97487 other downstream 107138 9142899 ~ 9149419 (+) True G72281
TU97933 other downstream 1042818 10078579 ~ 10082140 (+) True G72621
trnar-ucg_4 other downstream 3567591 12603352 ~ 12603424 (+) True trnar-ucg_4
XR_002650241.1 other downstream 3835723 12871484 ~ 12897931 (+) False LOC103043719
TU99159 other downstream 5613068 14648829 ~ 14649551 (+) True G73533

Expression Profile