RNA id: TU97469


Basic Information

Item Value
RNA id TU97469
length 317
lncRNA type intronic
GC content 0.40
exon number 2
gene id G72263
representative True

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 9142362 ~ 9151966 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GTCACAGATCAGTTTTTAGACCGAGAGAAATGTtctgaatataatataacaataacagcTACTGATGAGGGTTCTCCTTCATTCTCCTCcaataaaacactaaatctGAAAATATCTGATGTAAATGACAACGCCCCTGTGTTCCAGCATCAGTCATACACCGCTTATGTGCTGGAAAATAACACACCTGGAGTGTCTATATTCGCAGTGACAGCAGCTGATAAAGACTCTGGTAACAACGCGCGTATTTCCTATTTTCTTGAGGATGTTCTCGTGAATGGAGTTTCAGCCTCGACTTATATTTCAGTGAATGCAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU97484 lncRNA upstream 51744 9089876 ~ 9090618 (+) True G72278
TU97464 lncRNA upstream 106336 8955355 ~ 9036026 (+) False LOC103030246
XR_002650234.1 lncRNA upstream 349186 8784572 ~ 8793176 (+) True LOC111193079
TU97390 lncRNA upstream 657599 8483923 ~ 8484763 (+) True G72209
TU97383 lncRNA upstream 704267 8437870 ~ 8438095 (+) True G72202
TU97492 lncRNA downstream 75549 9227515 ~ 9227886 (+) True G72285
TU97515 lncRNA downstream 440341 9592307 ~ 9639931 (+) True G72305
TU97519 lncRNA downstream 445983 9597949 ~ 9651534 (+) False G72306
TU97521 lncRNA downstream 445983 9597949 ~ 9651534 (+) False G72306
TU97518 lncRNA downstream 497181 9649147 ~ 9651534 (+) True G72306
XM_022672088.1 mRNA upstream 280 9137787 ~ 9142082 (+) True LOC111193090
XM_022672085.1 mRNA upstream 12132 9127307 ~ 9130230 (+) True LOC103033934
XM_022672086.1 mRNA upstream 19571 9120530 ~ 9122791 (+) True LOC111193087
XM_015608816.2 mRNA upstream 42132 9097379 ~ 9100230 (+) True LOC103033622
XM_022672090.1 mRNA upstream 48885 9092223 ~ 9093477 (+) True LOC107197811
XM_022672087.1 mRNA downstream 4767 9156733 ~ 9158398 (+) True LOC111193089
XM_022672084.1 mRNA downstream 6988 9158954 ~ 9162743 (+) True LOC111193086
XM_022672083.1 mRNA downstream 19356 9171322 ~ 9174899 (+) True LOC103034588
XM_015608812.2 mRNA downstream 35278 9187244 ~ 9194515 (+) True LOC107197946
XM_015608793.2 mRNA downstream 44487 9196453 ~ 9225559 (+) True LOC111188173
TU96877 other upstream 2256821 6881587 ~ 6885541 (+) True G71788
TU96736 other upstream 2603568 6525641 ~ 6538794 (+) True G71682
trnaa-agc_15 other upstream 3104614 6037676 ~ 6037748 (+) True trnaa-agc_15
trnaa-agc_14 other upstream 3105488 6036802 ~ 6036874 (+) True trnaa-agc_14
TU96351 other upstream 3636724 5499908 ~ 5505638 (+) True G71414
TU97933 other downstream 926613 10078579 ~ 10082140 (+) True G72621
trnar-ucg_4 other downstream 3451386 12603352 ~ 12603424 (+) True trnar-ucg_4
XR_002650241.1 other downstream 3719518 12871484 ~ 12897931 (+) False LOC103043719
TU99159 other downstream 5496863 14648829 ~ 14649551 (+) True G73533
XR_002650242.1 other downstream 5739568 14891534 ~ 14921003 (+) False rpgrip1l

Expression Profile