RNA id: TU97519


Basic Information

Item Value
RNA id TU97519
length 433
lncRNA type inter_gene
GC content 0.50
exon number 4
gene id G72306
representative False

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 9597949 ~ 9651534 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

cctagcaacaccatagcaacaccttagcaaccgcctagcaacaccttagcaaccacctagcaaccatctagcaacaccttagcaaccaccccagataccatagcaacaccttagcaaccacctagcaacaccttagcaaccccccggatatcatagcaacaccctagcaaccacctagcaaccacctagcaacacgttagcaaccaccccggataccatagcaacaccttagcaacaacctagcaaccacctagcaacaccttagcaaccaccccagataccatagcaacaccttagcaaccacctagcaaccacctagcaacaccttagcaaccaccccagataccatagcaacaccttagcaaccacctagcaacaccttagcaacaccttagcaaccacctggtttatgttagcaactgcctagcaacca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU97492 lncRNA upstream 370063 9227515 ~ 9227886 (+) True G72285
TU97469 lncRNA upstream 445983 9142362 ~ 9151966 (+) True G72263
TU97484 lncRNA upstream 507331 9089876 ~ 9090618 (+) True G72278
TU97464 lncRNA upstream 561923 8955355 ~ 9036026 (+) False LOC103030246
XR_002650234.1 lncRNA upstream 804773 8784572 ~ 8793176 (+) True LOC111193079
TU97761 lncRNA downstream 41135 9692669 ~ 9698998 (+) True G72488
TU97763 lncRNA downstream 41135 9692669 ~ 9698998 (+) False G72488
TU97773 lncRNA downstream 56903 9708437 ~ 9710214 (+) True G72496
TU97779 lncRNA downstream 66139 9717673 ~ 9717915 (+) True G72500
TU97782 lncRNA downstream 69437 9720971 ~ 9721882 (+) True G72503
XM_022672093.1 mRNA upstream 249522 9276546 ~ 9348427 (+) True pcgf3
XM_015608793.2 mRNA upstream 372390 9196453 ~ 9225559 (+) True LOC111188173
XM_015608812.2 mRNA upstream 403434 9187244 ~ 9194515 (+) True LOC107197946
XM_022672083.1 mRNA upstream 423050 9171322 ~ 9174899 (+) True LOC103034588
XM_022672084.1 mRNA upstream 435206 9158954 ~ 9162743 (+) True LOC111193086
XM_007228037.3 mRNA downstream 139737 9791271 ~ 9799463 (+) True LOC103043406
XM_022672096.1 mRNA downstream 175753 9827287 ~ 9853057 (+) True tbc1d2
XM_022672099.1 mRNA downstream 258872 9910406 ~ 9957528 (+) True LOC103044029
XM_022672100.1 mRNA downstream 258872 9910406 ~ 9957528 (+) False LOC103044029
XM_022672102.1 mRNA downstream 258873 9910407 ~ 9957528 (+) False LOC103044029
TU97487 other upstream 448530 9142899 ~ 9149419 (+) True G72281
TU96877 other upstream 2712408 6881587 ~ 6885541 (+) True G71788
TU96736 other upstream 3059155 6525641 ~ 6538794 (+) True G71682
trnaa-agc_15 other upstream 3560201 6037676 ~ 6037748 (+) True trnaa-agc_15
trnaa-agc_14 other upstream 3561075 6036802 ~ 6036874 (+) True trnaa-agc_14
TU97933 other downstream 427045 10078579 ~ 10082140 (+) True G72621
trnar-ucg_4 other downstream 2951818 12603352 ~ 12603424 (+) True trnar-ucg_4
XR_002650241.1 other downstream 3219950 12871484 ~ 12897931 (+) False LOC103043719
TU99159 other downstream 4997295 14648829 ~ 14649551 (+) True G73533
XR_002650242.1 other downstream 5240000 14891534 ~ 14921003 (+) False rpgrip1l

Expression Profile