RNA id: TU97559



Basic Information


Item Value
RNA id TU97559
length 672
lncRNA type inter_gene
GC content 0.41
exon number 2
gene id G72338
representative False

Chromosome Information


Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 8664755 ~ 8782160 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence


aaaagttttaaagtcaTAAAAGGTGtataatgtgattttattttttatataaacataatgaattttaaacaaataaaaaatcagtgACTGGGATCAAATGGTTTATGCTCTCACCGGATCAAACATGTCAGATTGGCTGAGTTCAGTTTTAAAGTCTGCAGATCCAGCCAGAACCATTCCAGCCACGTTGACCTTATCATTGGACACAAAGAGCTGCACTGCTGTCTCTGCCACTTTACGCACATAGTTATGCCTCTTCTCCATTCTCAATCGTGCAAAACGCAGCGCAGACTGTCCTCCTCTACCGTGTTTTTTGGGAAGGTCCACTGTGAATTTGTGCAGCACTTCTCTAGTGTTGCCCTGTAAGGTCCCGAATAGTGCACCACTTCCATCAATCACGATGAAGCCAAACTTACTGTCATCTGACAACAATGCTGTCAGAGCCTAGAgggaagaagaaagaaatactGCGCTGAGAGACTGTGTAAAACTCAGACAGTAGTGTATACTGCCAAAACAGTGAGATAAACTGACAGGGGTTAAAGAGTCAAGTGAAGCTCCACCTGCAGGACACAAAACAGCTGTTTAACACAGTGAGAGACGTGACAATCTGCAAAGATTGCTTTTAAACTGCAGTTCTGCTTAAAAGTCAGTGctgaacccttttttttt

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU97560 lncRNA downstream 14531 8664755 ~ 8666837 (-) False G72338
TU97547 lncRNA downstream 183495 8483358 ~ 8497873 (-) True G72329
TU97534 lncRNA downstream 238642 8441765 ~ 8442726 (-) True G72317
TU97532 lncRNA downstream 280124 8400868 ~ 8401244 (-) True G72315
TU97529 lncRNA downstream 304783 8376087 ~ 8376585 (-) True G72312
TU97562 lncRNA upstream 632 8683223 ~ 8782160 (-) False G72338
TU97569 lncRNA upstream 19292 8701883 ~ 8702315 (-) True G72345
TU97585 lncRNA upstream 43749 8726340 ~ 8727753 (-) True G72357
TU97603 lncRNA upstream 171305 8853896 ~ 8857516 (-) True G72370
TU97646 lncRNA upstream 326836 9009427 ~ 9036029 (-) True G72404
XM_022672042.1 mRNA downstream 506474 7867201 ~ 8174894 (-) False enox2
XM_022672041.1 mRNA downstream 506474 7867201 ~ 8174894 (-) False enox2
XM_007258567.3 mRNA downstream 524651 7867201 ~ 8156717 (-) True enox2
XM_022672040.1 mRNA downstream 839088 7775386 ~ 7842280 (-) True LOC103030515
XM_022671907.1 mRNA downstream 913007 7726618 ~ 7768361 (-) True med12
XM_007227997.3 mRNA upstream 52486 8735077 ~ 8758128 (-) True LOC103029481
XM_007227996.3 mRNA upstream 52487 8735078 ~ 8758126 (-) False LOC103029481
XM_022672092.1 mRNA upstream 570275 9252866 ~ 9276501 (-) True mfsd7
XM_022672091.1 mRNA upstream 570275 9252866 ~ 9268345 (-) False mfsd7
XM_007228031.3 mRNA upstream 862347 9544938 ~ 9625510 (-) True cplx1
TU97555 other downstream 35767 8639538 ~ 8645601 (-) True G72336
TU96981 other downstream 1368442 7309775 ~ 7312926 (-) True G71862
TU96917 other downstream 1623725 7057110 ~ 7057643 (-) True G71826
TU96859 other downstream 1856612 6777239 ~ 6824756 (-) True G71771
TU96529 other downstream 2839681 5829621 ~ 5841687 (-) True LOC103035656
TU97699 other upstream 483287 9165878 ~ 9174309 (-) True G72449
TU97707 other upstream 540101 9222692 ~ 9225559 (-) True G72453
TU98300 other upstream 2838296 11520887 ~ 11545223 (-) False LOC111193052
TU98292 other upstream 2838421 11521012 ~ 11545136 (-) False LOC111193052
XR_002650239.1 other upstream 3084918 11767509 ~ 11776139 (-) True LOC111193095

Expression Profile