RNA id: TU97562


Basic Information

Item Value
RNA id TU97562
length 1364
lncRNA type sense_over
GC content 0.41
exon number 6
gene id G72338
representative False

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 8664755 ~ 8782160 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

cagtaaaaaaaaaaataaaaaaagaaatgcaaaaggacccagagagacagaggtagGGAAGGGTTGATGGAGgacaagagaaaaagaagggagggacataaagaaaaatatatttgtgtaaGAGGAGTGAGTCCAAAGGCGACTTGGACTGAGCAGAGTTACATCCTGGGCACGTGCTGTCGTTTAAATTCAGTAGGGAAGGAGAACAGGAGATTAAACAAAATGAGGCAAAGTCCTATCCAATCAGAGTGCTCTAAGGCAGGGGCATAATCATTAATTGATGAAGGCTCAGTCCTTCATTTGATTGACCGTTAACTCCTCCTTTTCAGCATCTGAAattgtctgcatgtgtgtgcatgtgtatagGTGTGGGTTTGTGGTTAATTAGGgtccacacactctcactgcaaAAGAAAGACGCATTTCTTTCCATATTTCTTCATTCGTTCATTCTTTCTTTTCGGTTCTCTTCCCATTTCAGTTCCGACTACCTAGTAGTCATCCAAATCGAAAAACTCATCTTCATCTCCCTGATATTCCATCCCTTGGAAATCCACTCTGTACCGCAAGATACCGCCAATTCCTCCAAAGCCCTTGACAAACTGTGAACCCTCCTGACTCTTGTCTGTGACTATTTCCAGCGTGGCTCCAAATTTCTTGTAACTATTAGCAAACCACTCCAACAGCGGCATACACTCGATCAGTTCATGCTCCTGCCCCGTctctttgTCCGTGAAGTGAGACTTGTCCTTCTCTTGCTCAGGTGTCAAATAAATGGTCTTCTCATCATTCTCTAATCCGTTTAGCTCAGCCCCATGTACTCGTAAGATGTATCTCATGGTGTCCAGGTTCTCGTAAACAATGAGGATCTCCACTGCTCCCATCTCCAGTGCCTTCAGCGTGTCCTCCACACCAAAACAGTACTTTCCCGTGTCCTGACTGATCTCATCAAAATAGCGACCTATAAGCTTCTTCTCTTGAATGAATTTGACGTTTGAAAGGACCTCAGCCGACAGCTCAATGGCTTGATTGAAACCATTCTCTCCACCGTAAGAGATGTCCACCAGCTTCAAAACCTTCGCCTGTAACCTCTGTTACCAAATTACACACAGACAATCCCGACATTAATATGCTGCTAAAATCTGTAGCTTCCATTTTTCTTTACCAATGTTACACATAATATTAGAAAgaaatttttaaaactttaaatcagGTTAgtaaacattttcatttaagaATTTCTAAGGAACAATAGTGTTTTGTCAACATGGCAGTGTGTGTTACTGAGCATGCACATCTAAAGGAAAAGAATACTAAGGACTTAAATCTCTCTCAGCTGGTATGACAGAATTATCAGGTTAAAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU97559 lncRNA downstream 632 8681368 ~ 8682591 (-) False G72338
TU97560 lncRNA downstream 16386 8664755 ~ 8666837 (-) False G72338
TU97547 lncRNA downstream 185350 8483358 ~ 8497873 (-) True G72329
TU97534 lncRNA downstream 240497 8441765 ~ 8442726 (-) True G72317
TU97532 lncRNA downstream 281979 8400868 ~ 8401244 (-) True G72315
TU97603 lncRNA upstream 71736 8853896 ~ 8857516 (-) True G72370
TU97646 lncRNA upstream 227267 9009427 ~ 9036029 (-) True G72404
TU97683 lncRNA upstream 334800 9116960 ~ 9126594 (-) True G72436
TU97684 lncRNA upstream 340484 9122644 ~ 9130292 (-) True G72437
TU97685 lncRNA upstream 340484 9122644 ~ 9143407 (-) False G72437
XM_022672042.1 mRNA downstream 508329 7867201 ~ 8174894 (-) False enox2
XM_022672041.1 mRNA downstream 508329 7867201 ~ 8174894 (-) False enox2
XM_007258567.3 mRNA downstream 526506 7867201 ~ 8156717 (-) True enox2
XM_022672040.1 mRNA downstream 840943 7775386 ~ 7842280 (-) True LOC103030515
XM_022671907.1 mRNA downstream 914862 7726618 ~ 7768361 (-) True med12
XM_022672092.1 mRNA upstream 470706 9252866 ~ 9276501 (-) True mfsd7
XM_022672091.1 mRNA upstream 470706 9252866 ~ 9268345 (-) False mfsd7
XM_007228031.3 mRNA upstream 762778 9544938 ~ 9625510 (-) True cplx1
XM_007228032.2 mRNA upstream 762778 9544938 ~ 9623840 (-) False cplx1
XM_022672095.1 mRNA upstream 1018895 9801055 ~ 9824519 (-) True elp1
TU97555 other downstream 37622 8639538 ~ 8645601 (-) True G72336
TU96981 other downstream 1370297 7309775 ~ 7312926 (-) True G71862
TU96917 other downstream 1625580 7057110 ~ 7057643 (-) True G71826
TU96859 other downstream 1858467 6777239 ~ 6824756 (-) True G71771
TU96529 other downstream 2841536 5829621 ~ 5841687 (-) True LOC103035656
TU97699 other upstream 383718 9165878 ~ 9174309 (-) True G72449
TU97707 other upstream 440532 9222692 ~ 9225559 (-) True G72453
TU98300 other upstream 2738727 11520887 ~ 11545223 (-) False LOC111193052
TU98292 other upstream 2738852 11521012 ~ 11545136 (-) False LOC111193052
XR_002650239.1 other upstream 2985349 11767509 ~ 11776139 (-) True LOC111193095

Expression Profile