RNA id: TU97707


Basic Information

Item Value
RNA id TU97707
length 2838
RNA type TUCP
GC content 0.39
exon number 2
gene id G72453
representative True

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 9188399 ~ 9225559 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TTAATGATTTCATaactttttatttgaaatgtcaGTGTtcaagagaaaataaaacagcaatataaATATTAGCATATAAAATAAGTGTAACACTGAGGAGAAGGGGGAGGGGGAGTCTTAGCATTTAATAAGAGGGATGTTACAGTGGGATACAGAGCATTACGGCATtggcagagacacacacacatagataatatttatatttgtttcttCATATAGACATTAGGAAGCAGTCTAGCACATATGCACAATAGAAATCACAAAGGAAAAGGAAAGGCTACAGGAAGTTAGGAGGTTTGTTATTTTTGCGTCTATGCATTTAGGAGTGATCGATCGGAGAAGAAAGtaggagaaaagaaaatgtgaacacaaaaatatatgcaaaaaacTTCACAAGTTTCTAGACTACGTGTGTGCCACTTTCTTTTAAATCCTTAGAAGTTAATCTCTCTATTTACAATCGAGTTAGTGTTGGCCTTCATGTGCTAAAGTACTACTTCTGCAACACATCTCtgagaacattgttttttttagttattttgtttgtttgtttgttttttccccatcattttactataaaaaaaacaaaagtaatgcaACACATTCCAGTAGTAGGCCTGTGTTCCAGGCTTAGAAATCTTATTGGATACTTTTCTTAGTGAACGCATCTTACTCTGTATACTGACTGATATCTATTTACAACAGGTCATGATTTTTTAGCATTGTGTGGACGGATGGGAGGTATGGGGTAAATGATCAGGATTTCCAGCTGAGTGGAGCTTTGGGAACTGGACTGAATGTCCTATTTGCCCCTTCTGAGTGGCACTTCCATGATTGTGGCTTTAGGACTGAGCTTGCTGTTGCTTACTGTTGATTGTTGGGTCACTAAATTCTGAATCATCATTCTGAACTGAGGTTCCTGAAAGTATCTTAACTTAAACAACCAAAAGACTGTTCTTAAATTGTTAGGTGAGCATCACACTgtacactcactctctctacacCAGTTAAGATGATCTATTTAAGATAAAGATACTTTTAGGAGACTCTTGTAGGGCTCAGAACAACAATTGAACACTTTATGGTGTCAAAGCGAAACACTTCCAGTGTTTCTGAAAGATCTTATTTTGGCTCTACTGTACTCTCAGGCAGCTGGTAATTAATGTTATGATGTAATTAATGAtacagtctctctttctctgttacaGTACATGTATCGTGTTTGGCTCTGAACACATAGCATGCCACAAGGCTAGAAGTTACGCATGCACTGGGCTGGTGAAAGCACAATTTGAAGAGcttttgaaattattttaaaaaacttcCCAACTCACTAATGGAGAAGTGAGTCAAGctcaaaaactaaagaaaaaaagaaaaaaggacacAATGGATCGTTTAGAAAAGAGCAATTATTCATCTTCTCATTCTAACATCCAATTGATGCTACAAATGGAGTTGATCTCAAGGGGTTCTTCTCTGTCAAGCAATGCATAGTTACtcctagttttagctttagattTATAAGATGTTTGGCTAAAATgcgtcatgcaaaaaaaaaaggattaccTGTATTATATTCCTTAAAAGCTGAACCCTCACATACTTtgttagattttagatttcatGTATTCCATCAGTGGTAGCCTAGGCACAGCAACAGCTATTTATTTACCTGAAAAGGAAACGATTTgaggaagaagaaagaaaagtgtCAAACATCAGAATCAAATCAAACATCAAAGTGATATATTACAAAAATCAACACTTTTCTTCTGGGTAAGGCCAGGAAATGCAGCACAGGAtatacaaaaagaagaaaaacaaaaactcaaaGCATCAAATCAAATTATCATCAATATAATCATTACTATCATAAGTCATTTTCAACATGATGATCACCACAGGTTAACCCTCTCCCTCAGAGTGAAGAAGTAAAAGCAAGATCACCATCACAAAAGCACTGTGTTATACACCTGATGATGCCATACACGTCAAAGTATTGTCCTTCAAAACGaaacagcaaacaaaacaaagccaacaaaaaaaaaataaaaagtaaaatctcTCCCAACTTCCAAAACATTCAGCTAGACCAGAGGTCTAATGGAACCGTGATTAAATCTCTGTGTGAAAAATTATCCTATCATACgcaacacatactgtataatcaGCCGTGGTATAATACAGGGAATACAGTGAATGAAAGCTAGGACTGGAACAGACGGTGGGCTGTCTTTCTTGCACACACCCACCACAGTCAGAAGTCAAGAGAGTAACAACAAAAAGTGTttcaaaaccaaaaatcaaaataataaagaagACAAAAGAACTCCAGAGGAAGGTGCACATTGATACACTGATGTTTCCTCACTTCCttcttctcattttttccaCATCCTTTAAAGTTCAGTGCACCAAAGCTCACCAATCTCTGAAGCAGCAAGAGAAGAGTAAGCTATGTTCTTCCCTAACtcacctctttctttttctctctctaggtatatttccatccatctatccatCCGTCCTCACTGTCTACCTCATCCAGCACCACCCCTCTGTCTCATTCTCAATCTTTACTTCTTCTCCTTCTTGGTGGACTTCTTCTTGCTGGCAGGTGTCTGGGCCTTTGGTGGTTCAGGCTGGGCGGCAGAGACCTGAGGCGGGGCAGGGCCTGCTGGGGCTGCTGGGGGTTGGCGGTGAGCGTAGCCGTGCTGCCGGGGATGTAGACATTCTGACGGTAGTCGGGGACGTGCTGCAGGGTGAACTGCGGGCTGTAGCGGGTGCTCAAGCCCATGGTGCCCGGACCCAGAGTGTTGGTAGCCTCACTCACTt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_002650237.1 lncRNA downstream 26237 9195989 ~ 9196455 (-) True LOC111193091
TU97696 lncRNA downstream 57406 9158468 ~ 9165286 (-) True G72447
TU97695 lncRNA downstream 63778 9149126 ~ 9158914 (-) True G72446
TU97692 lncRNA downstream 64570 9142470 ~ 9158122 (-) True G72443
TU97685 lncRNA downstream 79285 9122644 ~ 9143407 (-) False G72437
TU97754 lncRNA upstream 357790 9583349 ~ 9583897 (-) True G72482
TU97755 lncRNA upstream 377716 9603275 ~ 9605540 (-) True G72483
TU97775 lncRNA upstream 481823 9707382 ~ 9709185 (-) True G72497
TU97787 lncRNA upstream 524891 9750450 ~ 9750692 (-) True G72508
TU97803 lncRNA upstream 557761 9783320 ~ 9783821 (-) True G72524
XM_007227997.3 mRNA downstream 464564 8735077 ~ 8758128 (-) True LOC103029481
XM_007227996.3 mRNA downstream 464566 8735078 ~ 8758126 (-) False LOC103029481
XM_022672042.1 mRNA downstream 1047798 7867201 ~ 8174894 (-) False enox2
XM_022672041.1 mRNA downstream 1047798 7867201 ~ 8174894 (-) False enox2
XM_007258567.3 mRNA downstream 1065975 7867201 ~ 8156717 (-) True enox2
XM_022672092.1 mRNA upstream 27307 9252866 ~ 9276501 (-) True mfsd7
XM_022672091.1 mRNA upstream 27307 9252866 ~ 9268345 (-) False mfsd7
XM_007228031.3 mRNA upstream 319379 9544938 ~ 9625510 (-) True cplx1
XM_007228032.2 mRNA upstream 319379 9544938 ~ 9623840 (-) False cplx1
XM_022672095.1 mRNA upstream 575496 9801055 ~ 9824519 (-) True elp1
TU97699 other downstream 48383 9165878 ~ 9174309 (-) True G72449
TU97555 other downstream 577091 8639538 ~ 8645601 (-) True G72336
TU96981 other downstream 1909766 7309775 ~ 7312926 (-) True G71862
TU96917 other downstream 2165049 7057110 ~ 7057643 (-) True G71826
TU96859 other downstream 2397936 6777239 ~ 6824756 (-) True G71771
TU98300 other upstream 2295328 11520887 ~ 11545223 (-) False LOC111193052
TU98292 other upstream 2295453 11521012 ~ 11545136 (-) False LOC111193052
XR_002650239.1 other upstream 2541950 11767509 ~ 11776139 (-) True LOC111193095
TU98666 other upstream 3338789 12564348 ~ 12564798 (-) False fbxo31
TU98667 other upstream 3338789 12564348 ~ 12564966 (-) False fbxo31

Expression Profile