RNA id: TU97754


Basic Information

Item Value
RNA id TU97754
length 527
lncRNA type intronic
GC content 0.28
exon number 2
gene id G72482
representative True

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 9583349 ~ 9583897 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

aaATGAGCGAAATCCATTCAGAACgctgttaattaacattgcaacactgaagaagcatagacctagttattatttaagaacaatgtttattaaaaaacgatCTCCCtgtctaatctaatataattaacaatgactaagaatataaaacactttctgaacaaattactttttttcattttaaacatGAAACAGCAAAAGGCTACACACTGCACAATaattaaaccgaaatagaccaagaacaataaaataatttacactGACTTTTGTCTACTCTAGTataattaacaatattttaaaatataaaatactttctgaacaaacaattttttttttgacatatagcctaaaaaaacagtaaaaaggatACGTGCGGACAGAGCTGTGTgatttataacattctaacttgtaaaacattttattgaacaaaatttgatttgttactttactatattgtgattatcacgccacagttttgtataaaataaaaatagcttaaaaaaacagaacctgACCCGACCCGAGGAAAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU97708 lncRNA downstream 357790 9188399 ~ 9225559 (-) False G72453
XR_002650237.1 lncRNA downstream 386894 9195989 ~ 9196455 (-) True LOC111193091
TU97696 lncRNA downstream 418063 9158468 ~ 9165286 (-) True G72447
TU97695 lncRNA downstream 424435 9149126 ~ 9158914 (-) True G72446
TU97692 lncRNA downstream 425227 9142470 ~ 9158122 (-) True G72443
TU97755 lncRNA upstream 19378 9603275 ~ 9605540 (-) True G72483
TU97775 lncRNA upstream 123485 9707382 ~ 9709185 (-) True G72497
TU97787 lncRNA upstream 166553 9750450 ~ 9750692 (-) True G72508
TU97803 lncRNA upstream 199423 9783320 ~ 9783821 (-) True G72524
TU97805 lncRNA upstream 204604 9788501 ~ 9799403 (-) True G72526
XM_022672092.1 mRNA downstream 306848 9252866 ~ 9276501 (-) True mfsd7
XM_022672091.1 mRNA downstream 315004 9252866 ~ 9268345 (-) False mfsd7
XM_007227997.3 mRNA downstream 825221 8735077 ~ 8758128 (-) True LOC103029481
XM_007227996.3 mRNA downstream 825223 8735078 ~ 8758126 (-) False LOC103029481
XM_022672042.1 mRNA downstream 1408455 7867201 ~ 8174894 (-) False enox2
XM_022672095.1 mRNA upstream 217158 9801055 ~ 9824519 (-) True elp1
XM_022672097.1 mRNA upstream 273273 9857170 ~ 9902893 (-) False LOC103042271
XM_015600804.2 mRNA upstream 273273 9857170 ~ 9902893 (-) False LOC103042271
XM_022672098.1 mRNA upstream 273273 9857170 ~ 9902891 (-) False LOC103042271
XM_007228033.3 mRNA upstream 273273 9857170 ~ 9898016 (-) True LOC103042271
TU97707 other downstream 357790 9222692 ~ 9225559 (-) True G72453
TU97699 other downstream 409040 9165878 ~ 9174309 (-) True G72449
TU97555 other downstream 937748 8639538 ~ 8645601 (-) True G72336
TU96981 other downstream 2270423 7309775 ~ 7312926 (-) True G71862
TU96917 other downstream 2525706 7057110 ~ 7057643 (-) True G71826
TU98300 other upstream 1936990 11520887 ~ 11545223 (-) False LOC111193052
TU98292 other upstream 1937115 11521012 ~ 11545136 (-) False LOC111193052
XR_002650239.1 other upstream 2183612 11767509 ~ 11776139 (-) True LOC111193095
TU98666 other upstream 2980451 12564348 ~ 12564798 (-) False fbxo31
TU98667 other upstream 2980451 12564348 ~ 12564966 (-) False fbxo31

Expression Profile