RNA id: TU97773



Basic Information


Item Value
RNA id TU97773
length 824
lncRNA type inter_gene
GC content 0.39
exon number 3
gene id G72496
representative True

Chromosome Information


Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 9708437 ~ 9710214 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence


cgtatatatgaaatttcaatttcagaccaaAGGACCACGTAAaacaagcaggcctgtaaagttttgtgagttttcatccattttaacctcctcaaacacctaccaacacaagaatgtattcacttcctgttttaatggggtatctcaagcaattcaactgtctgCCATTTCGTCcccgtttaagatatcgactattccttcgcaatttatcaccatGTATGTCTGGGGACTATCCACTGAcaatttagaggtaatctgacaaagactctaggaggagttcgaatgagtttgtgaaaaatatgtaaaaattccacaaattccaaaatggccgacttcctgttgggcggagctaatgcATTCTGATTGCTAATATGTGCAGAATCATATTGTCTATGTTTCTGTCAAAAATCGAGAATATCTGAGAATTTTTGAGAAGGCCACGGCTAATTTATTAGCCGaaccaaatagggggcgctgtagagtcatctagctacacacgacaaaaatgacaatatatatctAAGTCACTTCGAGGCcttattgaatctgccaattatCAAGAGGCTGAGCGCTTTCCAAAAATGTCATATgaaataggtggcgctagagagctgatgaaacACGAATatacaaaattttaatttaaggtgAAAGTTTGGCCTAAGccaaatagctctgtaaaattttaggagttttcaaacatcctaaccactccgaaacccagcgggaaactttttattttgcaacttcctgtcaaaatggccgacttcctgttgggcggagtcaaataaAACCTAGTGATTCTTGTTGTTTATGAAGAGGTC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU97761 lncRNA upstream 9439 9692669 ~ 9698998 (+) True G72488
TU97763 lncRNA upstream 9439 9692669 ~ 9698998 (+) False G72488
TU97519 lncRNA upstream 56903 9597949 ~ 9651534 (+) False G72306
TU97521 lncRNA upstream 56903 9597949 ~ 9651534 (+) False G72306
TU97518 lncRNA upstream 56903 9649147 ~ 9651534 (+) True G72306
TU97779 lncRNA downstream 7459 9717673 ~ 9717915 (+) True G72500
TU97782 lncRNA downstream 10757 9720971 ~ 9721882 (+) True G72503
TU97793 lncRNA downstream 62985 9773199 ~ 9773599 (+) True G72514
TU97903 lncRNA downstream 258353 9968567 ~ 9970042 (+) False LOC103043718
TU97912 lncRNA downstream 267761 9977975 ~ 9978422 (+) True G72606
XM_022672093.1 mRNA upstream 360010 9276546 ~ 9348427 (+) True pcgf3
XM_015608793.2 mRNA upstream 482878 9196453 ~ 9225559 (+) True LOC111188173
XM_015608812.2 mRNA upstream 513922 9187244 ~ 9194515 (+) True LOC107197946
XM_022672083.1 mRNA upstream 533538 9171322 ~ 9174899 (+) True LOC103034588
XM_022672084.1 mRNA upstream 545694 9158954 ~ 9162743 (+) True LOC111193086
XM_007228037.3 mRNA downstream 81057 9791271 ~ 9799463 (+) True LOC103043406
XM_022672096.1 mRNA downstream 117073 9827287 ~ 9853057 (+) True tbc1d2
XM_022672099.1 mRNA downstream 200192 9910406 ~ 9957528 (+) True LOC103044029
XM_022672100.1 mRNA downstream 200192 9910406 ~ 9957528 (+) False LOC103044029
XM_022672102.1 mRNA downstream 200193 9910407 ~ 9957528 (+) False LOC103044029
TU97487 other upstream 559018 9142899 ~ 9149419 (+) True G72281
TU96877 other upstream 2822896 6881587 ~ 6885541 (+) True G71788
TU96736 other upstream 3169643 6525641 ~ 6538794 (+) True G71682
trnaa-agc_15 other upstream 3670689 6037676 ~ 6037748 (+) True trnaa-agc_15
trnaa-agc_14 other upstream 3671563 6036802 ~ 6036874 (+) True trnaa-agc_14
TU97933 other downstream 368365 10078579 ~ 10082140 (+) True G72621
trnar-ucg_4 other downstream 2893138 12603352 ~ 12603424 (+) True trnar-ucg_4
XR_002650241.1 other downstream 3161270 12871484 ~ 12897931 (+) False LOC103043719
TU99159 other downstream 4938615 14648829 ~ 14649551 (+) True G73533
XR_002650242.1 other downstream 5181320 14891534 ~ 14921003 (+) False rpgrip1l

Expression Profile