RNA id: TU97805


Basic Information

Item Value
RNA id TU97805
length 1988
lncRNA type inter_gene
GC content 0.48
exon number 13
gene id G72526
representative True

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 9788501 ~ 9799403 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GAAAATATTGACAATTACTTGCTGTTAAACAATCACAATGACAAGGGTACAGAACATTGGAGAGGAAAGGTCCACCTGTCccgatattttttttttgctttcaaactgaaaaaaagaaaactcaacctgtcactcaaataaaaaaatatctacaaaaaaaacttgcaaaGTTATCCTAGGAATATTCTGGTCATGGCTAATGTTTTAAGGTTTCCAAAGCTTGAGAAGACCATCTTCACTATATGTAGAGATCAAGTTCTGATGAGGGTGGTGGGCAATACCAATCACATCCTTCTCGTGTACTGTCAAGGTTCTCTCCAGTTTGCCAGTGACTGTGCTGAAGCAGTAGAGCACGAAGTCCTCTCCCACGCAGTAGATCCACTCTCCTCTGGGGGAAAGTGTGCAGCCCCTCTCGCTTACCAGAGCTGAAACTCCTCACAATCTGGCCCTGCATGTTCATAATGACCACAGTGTTGGAGCGGTTACAGACTACAAAATGCTCTGGGTTCTTGGGAAGGAGGATGACGTTGTTCACAGTAATGTCCGTGCCAGCTGAGGCGCCGAGAGATTTAAATGTGCTTGTGCACTCGGTGGTTTTCACGTTccaaatCTTCACCGTGCCATCAGAAGAAGCACTGATAATATGGTGGCCATCAGGAGTGAATGTGGCTTCATTAACGAATGAAGAGTGGCCTCGGAACTCCTTCAGAGACTTGCCTGATTTTAGCCCATGAACtCTGATTGTTTGGTCAAACGAGGCTGAAAGAAGTTGACTGCTGTCTTTGGAGAAGCTCACACAGGTCACACCTTTACTGTGAGCACGCTCAAACCGGCGCAGACACTGACCACTCTGGATCTTCCACACCTTTATTTTGCCATCCTGAGCTCCTGTAGCCAGCATCTCTGTATCTCTGCTAAAACACATGCACAGCACAGCGTCGTCCATCATCATAAAATTATCCTGCGCCTGGTACTTCAGATCctttCTGATCTTGCCTGTGGTGAAGTTCCACACCTCAATGAAGCCATCAACAGAGCCAGTGACCAAATACTGACCATCCGGAGAGAAGCGGGAGCACTCCACGTGAGACTTCTGAccaaaCTTGATGTGTCTGCTCAGCTGGGTGGGGAATCGCTCTTCCTCTACATCCTTCACTGCAGCTTTGCCTCTGAACAAGTCGATAGTCATACCAGGAGGCAGAAGACCCTGGTGCTGCTGCCACTTCAGAGaCTGTCCAAGCAGAGCCATGAGACGTGAAGGAGGCACCACACTGACCTCGCCAGCCAACGCCTGGGCAATGGCTGCTCGGCGCTTTTCCTTACTGCTGCCATCAGGGTAAGCCTCTCTGGGGTCGAAGTAGGAGCGGGCCAGCAGGTTCTCCAGGTGAATGTACCTCTCAGGCTGAGTCTGTTTCAGCATAATCATGGGGTCAGTTTGTCTCAGCAAAGACCTGGCAGCTCCCAATTCTCTCAGCTCAATCAGGGTCTTGTCTGGCAGCTTGAGGGACTGGATAGCCTGTAGTACAGTGTCCCAGTGACCGCTGTTAATGTCAGCCACAAAACTTTCAATACTGTCCACTGTGTTGAGGGATACGGTGGTCTCCTCCTGCAGTGTTGCCAGTGTGCGATGCAGGTTATTTTCCTTTAAGTACTGCATGATCAGACGGATTAcgTCTGCTGACTCGATCTCCAAAGACATGGTGTAGATTTAGTATCAGTGGCAGACACGACACGCACTCAAACAAACAGCACGGGCTGTAGAAACGTCCGGACTCCTGCTCTGCGCTCCTGCTGAACACCGCCGACACTCAGCGCCACCCTGCGACCACTGCCAGCTACTCCCACCTACCCCCATACACTACATATACTAATCCCATACACTGTTTGTATACGAGGAATCTGTCTAGTATGAGAAACACAAaccacataataaaaaaaaatacaatataccaTATTGACAcaatatgttacagtatgttacatacagg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU97803 lncRNA downstream 4680 9783320 ~ 9783821 (-) True G72524
TU97787 lncRNA downstream 37809 9750450 ~ 9750692 (-) True G72508
TU97775 lncRNA downstream 79316 9707382 ~ 9709185 (-) True G72497
TU97755 lncRNA downstream 182961 9603275 ~ 9605540 (-) True G72483
TU97754 lncRNA downstream 204604 9583349 ~ 9583897 (-) True G72482
TU97813 lncRNA upstream 1672 9801075 ~ 9801510 (-) False elp1
TU97872 lncRNA upstream 56996 9856399 ~ 9858449 (-) False LOC103042271
TU97900 lncRNA upstream 155678 9955081 ~ 9957526 (-) False G72596
TU97901 lncRNA upstream 155678 9955081 ~ 9957526 (-) True G72596
TU97946 lncRNA upstream 190793 9990196 ~ 9990507 (-) True G72633
XM_007228031.3 mRNA downstream 162991 9544938 ~ 9625510 (-) True cplx1
XM_007228032.2 mRNA downstream 164661 9544938 ~ 9623840 (-) False cplx1
XM_022672092.1 mRNA downstream 512000 9252866 ~ 9276501 (-) True mfsd7
XM_022672091.1 mRNA downstream 520156 9252866 ~ 9268345 (-) False mfsd7
XM_007227997.3 mRNA downstream 1030373 8735077 ~ 8758128 (-) True LOC103029481
XM_022672095.1 mRNA upstream 1652 9801055 ~ 9824519 (-) True elp1
XM_022672097.1 mRNA upstream 57767 9857170 ~ 9902893 (-) False LOC103042271
XM_015600804.2 mRNA upstream 57767 9857170 ~ 9902893 (-) False LOC103042271
XM_022672098.1 mRNA upstream 57767 9857170 ~ 9902891 (-) False LOC103042271
XM_007228033.3 mRNA upstream 57767 9857170 ~ 9898016 (-) True LOC103042271
TU97707 other downstream 562942 9222692 ~ 9225559 (-) True G72453
TU97699 other downstream 614192 9165878 ~ 9174309 (-) True G72449
TU97555 other downstream 1142900 8639538 ~ 8645601 (-) True G72336
TU96981 other downstream 2475575 7309775 ~ 7312926 (-) True G71862
TU96917 other downstream 2730858 7057110 ~ 7057643 (-) True G71826
TU98300 other upstream 1721484 11520887 ~ 11545223 (-) False LOC111193052
TU98292 other upstream 1721609 11521012 ~ 11545136 (-) False LOC111193052
XR_002650239.1 other upstream 1968106 11767509 ~ 11776139 (-) True LOC111193095
TU98666 other upstream 2764945 12564348 ~ 12564798 (-) False fbxo31
TU98667 other upstream 2764945 12564348 ~ 12564966 (-) False fbxo31

Expression Profile