RNA id: XM_022672098.1


Basic Information

Item Value
RNA id XM_022672098.1
length 7222
RNA type mRNA
GC content 0.42
exon number 16
gene id LOC103042271
representative False

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 9856399 ~ 9902893 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

tacacacacacactttctctctcacacacacacacaatgctcaCCCTCTCCCTGGTACAACAGTGAACAATAGAACAATGGCTCCCTTCTGTATCGCAGCTTGGCAGCTCCGTGCTGTGGCTGTATTACACACGTAATGCTGCACAGTGCAGAAGATGAGCGAGCAGAGAAGGTCAACATCAAGCTCCTTCCCGCCAAGGTCCAGGTGGAGAAAGAGGGCAAAACGAGAATGGAAACCCTTGGAGGACCGAAGCTGCACAGATTTGCCATGGTTTCTCCTATTCACCCTCTTCTGCATAGGGATGGGTGCAATCTGTGGGTACACCATAGTGACGGGTGGAGCAGCACGGCTGGTGTTTGGATATGACAGTTACGGGAACACCTGTGGCCAGCTCAATGAGGCCATCGAAGGGGTCAGGCTGAGCGGCCTGGACCATCGGGACAGAAAATATGTATTCTTCCTGGATCCCTGCAACATAGACCTTGTTCAGAGGAAGATTAAGTCCATGGCCCTGTGTGTATCACTGTGTCCCACTGAGGAGATGAGGACATATGCAGACTTACGACGCTTCGCCATGAGTAACAATTCTGAGCTCTGCTCCTACGAGCTGGCTGGCCATAAATACCCGAGCCTTCCGGAGCGTTTTGACAAGTGTCCCAAACTTCCAGTTCCACAGAGTAAAGCTCTGCCGGTGTTTAACCGTTGCACGCCCGTGGATATCTCCTGCTACTCTAAGTTTGCTGAGGCGGTGGTGACGTTTGTCAGTGATAACACGGTGCTCCACAGGCTGATTGCTGGGGTGGTGGCCAGTAAAGAGATCATTGTTGGGCTTTGTCTGCTAGCGTTAGTGCTCTCCATGATCCTGATGGTGATTATTCGATACATCTCTGCTGTCCTGGTGTGGATTCTCACCTTTATCGTGGTGCTGGGTTCTCTAGgAGGCACCAGCGTTCTGTGGTGGTTATATATAGACCACAGGCTGACTATGAACGAGACGGTGGTGAAGGATTTGAAGGAAGTGAAAGAAACAAGTGGAGAAACGAATGGAGAAATGGAGGCTTCCAAAGACCACATGCAAGCCCTGCTGGTCTATGCCATCTCAGCGACTGTGTTCACGGTgatcctgctgctgctgatgttgtTTATGAGGAAGCGTGTGGCTCTGACTATCGCTCTTTTCCACGTGGCTGGGAAGGTGTTTATCCACCTGCCTCTGCTCGTGCTGCAGCCTTTCTGCACCTTTCTCGCCCTCTTCCTCTTCTGGGTCTACTGGATCCTGGTGCTCCTCTTCCTCGGAACAACTGGGATTCCTGAGAAGAACGAGGAGACGGGACTAACAGAGTTCAGGCTCAGCGGCCCACTGCAGTATCTCACCTGGTACCATGCTGTGGGACTAATCTGGATCAGTGAATTCATCTTGGCGTGTCAACAAATGACTGTAGCTGGAGCTGTGGTCACGTACTACTTCACCAGAGACAAGAACAAACTCCCTCTGACACCCATACTGTCGTCAGTGTTGCGTTTGATGCGTTATCATCTGGGAACTGTGGCCAAGGGCTCTTTCATCATCACCCTGGTCAAGATCCCACGACTCATCCTCATGTACATTTATAACCAACTCAAAGGAAAGGAGAATGCGTGTGCACGCTGCTTACTGAAGGCATGTATTTGCTGCCTGTGGTGTTTGGAGAAGTGCCTCAATTATCTGAATCAGAATGCGTATGCAGCAACGGCCATCAACAGCACCAGTTTCTGCACGTCGGCACGAGATGCCTTTGTGATTCTGGTGGAAAATGCTCTGAGGGTGGCAGCAATCAACACCGTGGGAGACTTTGTGCTTTTCCTTGGCAAAaTCCTGATTGTGACGTGCACAGCGTTTGCGGGGGTCCTGGCACTGAACTATCAGAGGGACTACACGGAGTGGGTGCTGCCGCTCATCATCGTCTGTCTGTTCGCCTTCCTGGTGGCCCACTGCTTCCTGTCTATCTTCGAGATCGTGGTGGACGTGCTCTTCCTTTGCTTCGCCATCGACACCAAATACAACGACGGCACGCCTGGCAGGGAGTTCTACATGGACAAGGCCCTTATGGAATTCGTGGAGAACAGCAGGAAAGCTGTGGCCCCAGCAGAACGGGGGCGGAGCAAGCGGTCCCGTGCCCGCGAGGAGGCGGAGCTGACGGAGATGAAGGCCATGGCTCCTGGAACAAGTTCAGCTTGACCAAAAGCAGCCCATGGgactttttaaagacattccaaaatgtttatttttaccaatgtGTAACATGTTTACTATGGTTTCACTCCAGggaatacagtattttaataagaaactgtaaaaaaaagaaataacaatGTAATGAAGCACTTTATATTGAAGCGCTGCATATTTTAAAAGGCTGATGCATTTTTCGTAGTGATGTCCTTTTTATAAGACTAAAAAACAATTGCCATCTAGTGAAACGCAGTATTAATAATGTCtagaatcactgtttttattatgtAAGATTTTCATAACAagctttttgttctttttttcttaaatggGTTTCTTGAGGTTTGTTAGAAACCCTGGTGTCATGCAGCAATGAAGAActtgattgattgttttttttttttttttttacgttctAACACTGAAGCATCTGCACATTTTTGCTCCTGTCTGTTGATGTTTTATTATTCTCAGTCACGTGATGGGAGTTTATCTGTGTTTGGGATGGAATATGAGTCTGAGGTCTGTGCTTTATGCCTCAGTGTTTAGACTGAAGTTCCGACTGAAGATCTTCATTTTGACGGAAGCAGAGTCTACTTTTTCAGTGCATGGAAGAGGATgggtttattctttttttttccagaggaaGAAGTCTGTGATTTGAAGCTTTTGAAGAAAGGCTGTTCTTTGATGGTCTTTGGCCAGTGACAACTGTTCTGCTACTGGGCCTGCTGGTTCTTTCAGGTCTGCTTTGTGCTCAGTTTAAATTCAGAaatcagactgtgtgtgtgttcagtgtttcagagCAAATGCTGGGGAGAATTATGAATGCTAATTCTGAGCTGGGGCTGAACAATATTTCAGGAAAATGTGTAGAGTGTCCACAATTTAAAGCTTCAGTTTTAAACTCAAGCTCAAAGGTAAATGTTCCTAACATCACTCAAATCTATTTTTTCCTGTCAACACTTGCTTACATGTCTCTCAACCTGCTTTGACCACAACATCTAGGTCTGTATTGAGGTCACACAGGCTTGTTGTTATGGTTTATGGAACAGTATGACTTTGAGTGCTTCTTAGCAACTTTAGCAGTGTACTGAAAACTATGACAATTTGTCTTACGTAAGTGGAAATTTGTGTAGCCATTATttattatcaaatcaaatctatTTGTATAGCGAACGCTCGCACGCCTTTTATGCAACACATTTGTTTAACTGattttgtcacaaagcagctttacaggacagagaatcagacaaaaccaTGAATGTTCAATACAGAACTCCCAGTGACCTCTGAGGTTGAAAATAtgatatgttaaaaatatacacTCTTTGTGTGCTTGATTAATTTGTGAActtgtctgttttgtttaaaactgAACAATGTGCACTCAGGAAATTACCAAGAACTTACTTTATTGGAAATCTACATTTAAAGTCCAGGTATACAATAAGGTACGTCCTCAGAGTGTCTTTCGCTCAGATTTACACAAAACATTTTCAGACCCACAACTCTACCTATTACAAATGAAAGTGAaataacagacacacaaacaaagtACTTATATGCAAACCTGTTCACCTTATAATCATTAGGAGGTTAGCTCAGGTCATATAAGACCAGCTTCCTATTTCTTTGAATGGGATGAGACCAACATACTGAAAACTAAATGTCACATTACAATTTGTGATGTACCATTATCTCACTGAtaagatctaaataaaaaacgAATAGATAGTTTGTAGCATATGACTCAATAAtgcataaatatgtttttttgggttgttATGGTTGTTATCTCCTCATCAAAGTGAGATTTCCCTTCTAGCGCAAGTTGCAAACTGATTGGCTCTTTCTGCTCCATAAACAGACAACATGTTGAGcattataaacactccaaaccatatttaaaaaataattatgttacTGTGTTAGTGATCCCTGATTGGCCTGGAGTTAAACTTATTTAATTAAGTGTTTCTGTTGGATAAAGTGGATCCCTTGAATCAGAAACCCAAACACAGGTCAGATATGGGTGTTGTGAAGGCTGATGTTGAAGTACTGGAGtgaaatattgtgcagccctgacCAGCATTCAGTCTCTGAGACTCTGAGATGCATACAGCTCTTTATTCAGTTGAGCTGGAAACACTCACAGGCCTTTAGGCATCACACCAAGCATGTATGGGCGTGTATTCATCCACAGGCTGAAGTAGAGCTGTGCATGTTTCTACTGACACGAGTTCTACAGAACTGATTACAGCATGAATACAGGCCCGGCACCTGCTTTCTTGATTGTTTTGAAGCAcaattgattgttttttttttttttttttacctcacaaAATGCTAAACACTACAGTGCTATTTTGGGACGCCAGGCTCTGCCCTCTCCTCAAGTGCAGTGTAGGATTTCTTTGCGAGGGCTATTTCTTCAGGTCCTTCTCTCTTCAGAGCGCTTGGTTAGCATTTCTGcgaagaaaatgtttttttttctgcatgtgaactaagcttttctttttttgtgtgtatgtgtagaaaGTGGAAATAGTACTAACATGGGTTAGGTAATggttctctttctcacactgcATCCTGTGGAGAGTCCAGCAGCTTTGAAGTcactgtgtggtgtgtgagcgTCCACTTTTACATCTGCAGCAAACTCTCGAGTCTTCCTATTTGCACTACATTTCTCCAgagaaggtgttttttttttttttttttttttttccagttttcggTTTTTGTGAGGCACCCTGTGATCCTGAGTGAGGGGGAGAGGAGAGGCACACAAAATAAACCTCGCATCTTGCCTTAACTCATCCAGCGGGCAGCGCCCCCTACTGGATTTTAATTGGTTAGTTACAGTGCAGTATACTTTCCCCCACGACATTCAACCGTGACAAAGCTTCTGAGCCTTAAACCAGACCTAATGTTCTATAACGCATCCTGGACAGTAGTATCTTGTCACCTGGATAGGACAGGAGCAGCTACGAGAAAGagttcatgtttatttaaagcactTGAATTAGAGGAACTGATTTTTAACTTGCtaccttttttgtcattttgttctatataaaaaagagtttttcaCAAAAGGAACTGCCTTCCATTCAAGGAATTTGGTCATCATTACCTGTCTTCATACTTCAACTTGAACAGGAAAGAAAAATTTGTGTAAAGATGAGCTTCCTGGATAAATGCTTAGCCTCTCGTTTTAAAAACAGCACCAACCCTGTCAGGTAAACATTACACCTCTCTCTTGAGTATGGAACAATTTGAGAACCAGCTTTAAAAGTTCAACACctaacactgaatattaataagAGAACAATATAGCCTGATATTTATGAATCAAGTTTGTCAGTTTAATATGCATACTTATATAAATGAATTACTCTAGATGCATTCCTGTGTTTGAGGGCCATTTAGCCATTTTCCCTGATATTTAGTGGTTGTCCACTATAAAATTTAGCTTCTAGAAATTACAAAACTATAATGATTCAGCTCATAAAAAGAATTCAATTTAACAATCAGCTGCTGTGAAAATGATCATGTGTGATATTTCTTTGTAATAAGTTCCCATGAGTCTATCAGTCACTTACCCAAATCTTTACTTTAGTAAGCTGTCTAAGTGATAGGCTTTACATGACCAATTAGGTAGATGAATGTTTGTCACTCAAACAGTgacacaatatacatttttacagtgctTATGTACTCTCAGGAGGTTGGTGTGGTCTCTTCCTGACTAGACTGTATTATAAGTAAGATTTGCTGTAAATTAAgtgaaatgaaataataattgcACATATTTGTTCTTAGACACATAATTATACAAGATTTCTATAAGTTTTTCCTTAAGGCATCATTTATTGAACTAATTTAACCCTCTAGAGTCCACCTTTTGTTTACTACATTGCTGTTGCTGTAATCATCATTAGTTTTACTGACCCCAAAATCTGATTAACCAGCTACCAAACCACATTCACAATAGATTGTGAAAAGACCTGAATAGTAAGGGTGTACTTAGAGTGTAAATGGTTAAGGTAAGATAAGCTGTTGATACATTACTTGTGTGAGATATGGGCAGTGCTGGCCAAACATTGGGACGCAGTTTCTTTTGTGTGGAATTCTCATAAATGAGAACATGTAAAGGAAAATTTCAGTGGGAGCAGAAGGAGGTGAATATGATGTTGTGAGGtatgcagtttttttatgtacagtgtATATGAACATGTTATGATACATGTTGGACTGATAATAACAATGttgaaaattgtattttttgacaAGGGACCTGAACGTGTATTGTGGATTTCTGTTGATTTGTCATTGTCTCACATCAGGAGGGAGGGGGATGTGTTGTAGGCTTGAAACACttggaaaatgtgaaaaactggaaaaaaaaatagattgaaTCGAgtaaaaaaatgatcagatttaaCGTTGCCACACTAGTCTTATGCTCAAAGCATGTTATGAATTGCACTAAGATGGTATTAATGTTAACACAGGTATGTATTGATGATACCTGTAAtaatgatagatatatatatatacagtagatacatatattttaaattgtcttATAGTAGATTCAGCTATTTGATTGAAGTGTTTGATGAAGGTTTTAGGGAGGGGGTTCCCTCTGATTTGTCTGTAAATGCTTGAGACTAATGCAGTTAGTAGAGGTTTTCTGTAGTTCTTACTGATTCTGCTCCAGTTGTGGAGGATCTGGGTTGGAAAGACTGGTCCCAGATCAGTGTGGAGGAGCATCTTCTGCAGCCTGAGGCAGTGCTGAGTAATGGCAGCGACCCGCTCGCCACTCCAGCCCCCCACCCACCTTGTTTTTTGCCAAATGTGTGCACAATGGGAAATTCACACAACGTGCACAAAAGCTGTATTGTGCTAACTGGTTGAAAACCAGTTTGTTATTGTTTTGGTATTTGGTCGGgtccttgtatttttttttctcccattttctcactatctctctc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU97813 lncRNA downstream 55660 9801075 ~ 9801510 (-) False elp1
TU97805 lncRNA downstream 57767 9788501 ~ 9799403 (-) True G72526
TU97809 lncRNA downstream 57767 9798072 ~ 9799403 (-) False G72526
TU97803 lncRNA downstream 73349 9783320 ~ 9783821 (-) True G72524
TU97787 lncRNA downstream 106478 9750450 ~ 9750692 (-) True G72508
TU97900 lncRNA upstream 52190 9955081 ~ 9957526 (-) False G72596
TU97901 lncRNA upstream 52190 9955081 ~ 9957526 (-) True G72596
TU97946 lncRNA upstream 87305 9990196 ~ 9990507 (-) True G72633
TU97949 lncRNA upstream 149118 10052009 ~ 10053241 (-) False LOC103037069
TU97984 lncRNA upstream 206845 10109736 ~ 10162458 (-) False LOC103046452
XM_022672095.1 mRNA downstream 32651 9801055 ~ 9824519 (-) True elp1
XM_007228031.3 mRNA downstream 231660 9544938 ~ 9625510 (-) True cplx1
XM_007228032.2 mRNA downstream 233330 9544938 ~ 9623840 (-) False cplx1
XM_022672092.1 mRNA downstream 580669 9252866 ~ 9276501 (-) True mfsd7
XM_022672105.1 mRNA upstream 55629 9958520 ~ 9965719 (-) True LOC103036760
XM_015608595.2 mRNA upstream 149061 10051952 ~ 10054034 (-) True LOC103037069
XM_022672108.1 mRNA upstream 170338 10073229 ~ 10093613 (-) True phrf1
XM_022672107.1 mRNA upstream 175861 10078752 ~ 10093613 (-) False phrf1
XM_022672106.1 mRNA upstream 175861 10078752 ~ 10093613 (-) False phrf1
TU97707 other downstream 631611 9222692 ~ 9225559 (-) True G72453
TU97699 other downstream 682861 9165878 ~ 9174309 (-) True G72449
TU97555 other downstream 1211569 8639538 ~ 8645601 (-) True G72336
TU96981 other downstream 2544244 7309775 ~ 7312926 (-) True G71862
TU96917 other downstream 2799527 7057110 ~ 7057643 (-) True G71826
TU98300 other upstream 1617996 11520887 ~ 11545223 (-) False LOC111193052
TU98292 other upstream 1618121 11521012 ~ 11545136 (-) False LOC111193052
XR_002650239.1 other upstream 1864618 11767509 ~ 11776139 (-) True LOC111193095
TU98666 other upstream 2661457 12564348 ~ 12564798 (-) False fbxo31
TU98667 other upstream 2661457 12564348 ~ 12564966 (-) False fbxo31

Expression Profile