RNA id: TU97903


Basic Information

Item Value
RNA id TU97903
length 587
lncRNA type sense_over
GC content 0.44
exon number 4
gene id LOC103043718
representative False

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 9968506 ~ 9970042 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ACAACatcacactcttcacacacgGCCTCACTTTGGGTGGATATTACAAAAGAAACTCCAGAAAAAATACCAAGTGCTTCTTTTCAGACTTCAGCAGCGGAAGAAGGccaaatattcaaattctgcAGTTTTCAGATGTTTTACAACATGACCGGGACAGCTGTGATACTGATGTGCCTGCTGCTCACCTTTTCTGTGGACGCAGAAGACAAGTCAAGGCTGTACAGAAGGCCTGCATGTGGAGACATGTCAATGAATCATGCATGTCCCCTCAACTACTCTCCAGTCTGCGGAAACGATGGTGTGACTTATCCCAACGAATGTGCTCTGTGTGTGCACAGACTGCACACCAACTCTGATGTTCTGATCGTGAAAGAAGGGGGCTGCTGAGGAGTGCAGGTATCGCCTCCCTCACCTGATCTCCACTTCTGCGTTCGTTTTTTGTGCTTGTTATGGTGCACTTTTCTACTCCTATTTACTCTGCACCTAGAACACGTAATCGTTTTCCTACATATACTCATATAGATGTGAACATGCTGCTTATGTTTGAATTTTGCTATTAAATATTCATTCCATGTATTatcaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU97793 lncRNA upstream 194968 9773199 ~ 9773599 (+) True G72514
TU97782 lncRNA upstream 246685 9720971 ~ 9721882 (+) True G72503
TU97779 lncRNA upstream 250652 9717673 ~ 9717915 (+) True G72500
TU97773 lncRNA upstream 258353 9708437 ~ 9710214 (+) True G72496
TU97761 lncRNA upstream 269569 9692669 ~ 9698998 (+) True G72488
TU97912 lncRNA downstream 7933 9977975 ~ 9978422 (+) True G72606
TU97918 lncRNA downstream 58441 10028483 ~ 10028846 (+) True G72612
TU97923 lncRNA downstream 87441 10057483 ~ 10057818 (+) True G72615
TU97925 lncRNA downstream 88643 10058685 ~ 10058886 (+) True G72617
XR_002650238.1 lncRNA downstream 127217 10097259 ~ 10099145 (+) True LOC111193092
XM_022672099.1 mRNA upstream 11039 9910406 ~ 9957528 (+) True LOC103044029
XM_022672100.1 mRNA upstream 11039 9910406 ~ 9957528 (+) False LOC103044029
XM_022672102.1 mRNA upstream 11039 9910407 ~ 9957528 (+) False LOC103044029
XM_022672101.1 mRNA upstream 11039 9910407 ~ 9957528 (+) False LOC103044029
XM_022672103.1 mRNA upstream 11039 9910408 ~ 9957528 (+) False LOC103044029
XM_007228041.3 mRNA downstream 4182 9974224 ~ 9977824 (+) True thg1l
XM_015600832.2 mRNA downstream 6333 9976375 ~ 9977824 (+) False thg1l
XM_007228043.3 mRNA downstream 95374 10065416 ~ 10073101 (+) True irf7
XM_007228044.3 mRNA downstream 95375 10065417 ~ 10073101 (+) False irf7
XM_007228055.3 mRNA downstream 215695 10185737 ~ 10206122 (+) True hras
TU97487 other upstream 819148 9142899 ~ 9149419 (+) True G72281
TU96877 other upstream 3083026 6881587 ~ 6885541 (+) True G71788
TU96736 other upstream 3429773 6525641 ~ 6538794 (+) True G71682
trnaa-agc_15 other upstream 3930819 6037676 ~ 6037748 (+) True trnaa-agc_15
trnaa-agc_14 other upstream 3931693 6036802 ~ 6036874 (+) True trnaa-agc_14
TU97933 other downstream 108537 10078579 ~ 10082140 (+) True G72621
trnar-ucg_4 other downstream 2633310 12603352 ~ 12603424 (+) True trnar-ucg_4
XR_002650241.1 other downstream 2901442 12871484 ~ 12897931 (+) False LOC103043719
TU99159 other downstream 4678787 14648829 ~ 14649551 (+) True G73533
XR_002650242.1 other downstream 4921492 14891534 ~ 14921003 (+) False rpgrip1l

Expression Profile