RNA id: TU97912


Basic Information

Item Value
RNA id TU97912
length 448
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G72606
representative True

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 9977975 ~ 9978422 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

AGTATCGACTGTGACCACAAGGAGGCATCATTGTTGTACTTCATATACATCCATGGATATGGCCTACATGTTACACTAgggcagtgtttctcaatcctggCCTGGATGCCCCTCTGCTCTGCACATTCATTACTTTTTCTTTAACTAATTCAACCTATTTCAACTAATCACACCTAATTCAGCTATTTAACAAGCCCTTCCAGTCATGCAGGGGTGTTTTAAAGCAGATAATCtaaaatgttctgaaaatattgattgaaaacagaaaagagttaacattttaacagccaCAAACTCATTTCACTTACAAATTGGGTCGCACCCTAGATCATGGACCTTAGCCTACCAAAGGTATCCGCTGTCTTGCTGTCACACTTTTTGCATAGGCAATTCTATGggcctttttgttttttagattttgtGATGGTATAACAATTCTTAATTTTAC

Function

GO:

id name namespace
GO:0015849 organic acid transport biological_process
GO:0046942 carboxylic acid transport biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU97903 lncRNA upstream 7933 9968567 ~ 9970042 (+) False LOC103043718
TU97793 lncRNA upstream 204376 9773199 ~ 9773599 (+) True G72514
TU97782 lncRNA upstream 256093 9720971 ~ 9721882 (+) True G72503
TU97779 lncRNA upstream 260060 9717673 ~ 9717915 (+) True G72500
TU97773 lncRNA upstream 267761 9708437 ~ 9710214 (+) True G72496
TU97918 lncRNA downstream 50061 10028483 ~ 10028846 (+) True G72612
TU97923 lncRNA downstream 79061 10057483 ~ 10057818 (+) True G72615
TU97925 lncRNA downstream 80263 10058685 ~ 10058886 (+) True G72617
XR_002650238.1 lncRNA downstream 118837 10097259 ~ 10099145 (+) True LOC111193092
TU97959 lncRNA downstream 118855 10097277 ~ 10099144 (+) False LOC111193092
XM_007228041.3 mRNA upstream 151 9974224 ~ 9977824 (+) True thg1l
XM_015600832.2 mRNA upstream 151 9976375 ~ 9977824 (+) False thg1l
XM_007228038.3 mRNA upstream 7933 9968506 ~ 9970042 (+) True LOC103043718
XM_022672099.1 mRNA upstream 20447 9910406 ~ 9957528 (+) True LOC103044029
XM_007228043.3 mRNA downstream 86994 10065416 ~ 10073101 (+) True irf7
XM_007228044.3 mRNA downstream 86995 10065417 ~ 10073101 (+) False irf7
XM_007228055.3 mRNA downstream 207315 10185737 ~ 10206122 (+) True hras
XM_007228054.3 mRNA downstream 229287 10207709 ~ 10212496 (+) True LOC103047796
XM_007228053.3 mRNA downstream 234141 10212563 ~ 10221827 (+) True tsg101
TU97487 other upstream 828556 9142899 ~ 9149419 (+) True G72281
TU96877 other upstream 3092434 6881587 ~ 6885541 (+) True G71788
TU96736 other upstream 3439181 6525641 ~ 6538794 (+) True G71682
trnaa-agc_15 other upstream 3940227 6037676 ~ 6037748 (+) True trnaa-agc_15
trnaa-agc_14 other upstream 3941101 6036802 ~ 6036874 (+) True trnaa-agc_14
TU97933 other downstream 100157 10078579 ~ 10082140 (+) True G72621
trnar-ucg_4 other downstream 2624930 12603352 ~ 12603424 (+) True trnar-ucg_4
XR_002650241.1 other downstream 2893062 12871484 ~ 12897931 (+) False LOC103043719
TU99159 other downstream 4670407 14648829 ~ 14649551 (+) True G73533
XR_002650242.1 other downstream 4913112 14891534 ~ 14921003 (+) False rpgrip1l

Expression Profile