RNA id: TU97918


Basic Information

Item Value
RNA id TU97918
length 318
lncRNA type inter_gene
GC content 0.32
exon number 2
gene id G72612
representative True

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 10028483 ~ 10028846 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ACTAACTTTATTGTCTTTCAATGACATTCAGTGACAAACTGTATGATCTTTTCagaatttctttattaacaggctctctgctcatttaaagcaataaaaagtgCTCAGAGAGTGAAACCACTTATATTAGCACAGTCTAAAACCCAGCCAGGTGGATAAAACTGctatgaaactacatcatggtgagccctctaaactgaacatctaattaacatagccacgccccacagacagttgttttttttttaggtatattttcttttacataaaagaaagaaaaaaacgttttatttctatggttattttctgtattttttt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU97912 lncRNA upstream 50061 9977975 ~ 9978422 (+) True G72606
TU97903 lncRNA upstream 58441 9968567 ~ 9970042 (+) False LOC103043718
TU97793 lncRNA upstream 254884 9773199 ~ 9773599 (+) True G72514
TU97782 lncRNA upstream 306601 9720971 ~ 9721882 (+) True G72503
TU97779 lncRNA upstream 310568 9717673 ~ 9717915 (+) True G72500
TU97923 lncRNA downstream 28637 10057483 ~ 10057818 (+) True G72615
TU97925 lncRNA downstream 29839 10058685 ~ 10058886 (+) True G72617
XR_002650238.1 lncRNA downstream 68413 10097259 ~ 10099145 (+) True LOC111193092
TU97959 lncRNA downstream 68431 10097277 ~ 10099144 (+) False LOC111193092
TU98085 lncRNA downstream 542366 10571212 ~ 10626964 (+) False LOC103022150
XM_007228041.3 mRNA upstream 50659 9974224 ~ 9977824 (+) True thg1l
XM_015600832.2 mRNA upstream 50659 9976375 ~ 9977824 (+) False thg1l
XM_007228038.3 mRNA upstream 58441 9968506 ~ 9970042 (+) True LOC103043718
XM_022672101.1 mRNA upstream 70955 9910407 ~ 9957528 (+) False LOC103044029
XM_007228043.3 mRNA downstream 36570 10065416 ~ 10073101 (+) True irf7
XM_007228044.3 mRNA downstream 36571 10065417 ~ 10073101 (+) False irf7
XM_007228055.3 mRNA downstream 156891 10185737 ~ 10206122 (+) True hras
XM_007228054.3 mRNA downstream 178863 10207709 ~ 10212496 (+) True LOC103047796
XM_007228053.3 mRNA downstream 183717 10212563 ~ 10221827 (+) True tsg101
TU97487 other upstream 879064 9142899 ~ 9149419 (+) True G72281
TU96877 other upstream 3142942 6881587 ~ 6885541 (+) True G71788
TU96736 other upstream 3489689 6525641 ~ 6538794 (+) True G71682
trnaa-agc_15 other upstream 3990735 6037676 ~ 6037748 (+) True trnaa-agc_15
trnaa-agc_14 other upstream 3991609 6036802 ~ 6036874 (+) True trnaa-agc_14
TU97933 other downstream 49733 10078579 ~ 10082140 (+) True G72621
trnar-ucg_4 other downstream 2574506 12603352 ~ 12603424 (+) True trnar-ucg_4
XR_002650241.1 other downstream 2842638 12871484 ~ 12897931 (+) False LOC103043719
TU99159 other downstream 4619983 14648829 ~ 14649551 (+) True G73533
XR_002650242.1 other downstream 4862688 14891534 ~ 14921003 (+) False rpgrip1l

Expression Profile