RNA id: XM_015608595.2


Basic Information

Item Value
RNA id XM_015608595.2
length 2083
RNA type mRNA
GC content 0.52
exon number 1
gene id LOC103037069
representative True

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 10051952 ~ 10054034 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CGCGCAGCGGGGGCGGGGTCTCGCGCAGGAGCGTGCGTCGCTTTAAAGGGGGTGGGGTGGCGCGCGCGTGTTGAAAAAGCCCGGTGCTGCCAAAGTTTGTATCAGATCGCTCCGGTGTGGGTGCGCGAGGGGGGCCAGGAAAGACTTAACCTAGAGCTTTTGGACTCGCGACAGCCAGGAACGGGCGCGCACGCGAAACACACGAGTCTGGGTTTGGGACACGAGTCTAAAGAAAAGTCTAAGGAAAGACTTTGGTGGCGcgagcatcatcatcatcacctccACCGTGGCGACATGGAGACCATCAGCACCACCAGCACGACCACCTGCAGCACCACTGCAGCCACTATCATCGCcgctgctgctccagccaccTGCCCGTTTGCGCACGAGCGCGCCACAGCAGCAGCACTTGTCTCCAGCGCGACCAGCAGCAGAGCTCTCAAGCGACCCCCGCGCTCCAGCTCGCCGGAGCTCCTGCGCTGCAAGCGGCGGCTCACGTTTAGCGGGCTGGGCTACAGCATCCCGCAGCAGCAGCCCGTGGCCGTGGCGCGGCGCAACGAGCGCGAGAGGAACCGCGTCAAGCAGGTCAACATGGGCTTCCAGACCCTGCGGCAGCACGTGCCCAACGGCGCCGCCAACAAGAAGATGAGCAAGGTGGAAACACTGCGCTCCGCCGTGGAGTACATCCGCGCGCTGCAGCAGCTGCTGGACGAGCACGACGCCATCTCCGCCGCCTTCCGCTGCGGCGTGCCGTCCCCCAGCCTATCCCACAGCTACTCCGCTGAGCCGGAGTCGCCGCACTCCTCCTACTCCTCGGACGAAGGCAGCTACGAGCAGCAGCTGAGCTCCGAAGAACAGGAGCTGCTGGACTTTACCACGTGGTTCGACAGATACTGAGCGGGTAGGGCTGAGCCGCGTCCCGATAACCACTCTGAGCTGCGTGCGGAAAATAGCTCCACTAGTGCACTCGGTCActcccttcctctctccctcacaAAAAGCGCCGCAGACTGTGCCGTTGTTCACTACGGAGAGAGCCAGACAGCGGAGGGCGAGGCGAAGATTTGGGACACAGCACTCCGAGACGCTCTGCGCCGGTGTCATAGCAACCAGCAACAAGCATCAGCGAACTGACTGAGAACAGAACTAGCTAGCATGCTAAtttgctagctaactagctgtgacaaaagtgtcaaaaaaactgacaaaaagagAATTTGTGcacataaaaagagaaaaacgtGTCAGCTCAGTTTAAACAATCCAAGCTACCTTTTCCTAATTAGCGAACTAGCTAATTCTATGCTATGTTTGTATACCATTATGCTGTCTTGTTAGGGTAACCTTAGCTAGCCAGCAAGCAAGTGTTGAGGATTggaacaccaccaccatgacCACACACTTCCTAGTGCACTACTTAGGTAGTGATGAATCTGACACAGCCTTCACCGTCAGCATCCGCAGCTTCTGGCTGGCTGTCCCAGTGTCTCTGCTCTGAGATAAACgaggattaaaaaaagaaaaaaacaagacttcTTTCAACTCCGTTCAAAGATTTAAGGACACAAAGGGAGACTCTGGAAGCGACTGGAGGAAAAGATTTGAGCTGAAAAGTGCAATTATGGacttatgtatgtatgtgttgcTGATAGGGCTGTTTAGAGAGTGTTGTTTTGAAGTTGCTGACGTGACCATTCCTAAAAAGGGGACTTCTGTATTAtaagctgtattttttaatataaagattttatttttgtatgccgagctaagcaaaacaaaaaaggttCACTGCCTCTTCTGTGACAATGACCATGTGGTAGAATATGAGTTGTTAGTCAGAAGGTAACAATAATGTTGTTAATGCTCTTAACACTGTTTAGGGTTTTGTTCAGTAGAACATATTATTGATCAGACATCTGGCTCCTCATTGGCTGGACGAGGAGATGTTTAAAAGTGTATGCACTTGTTCTCAGTGTTCTGTAGACTACGGAAAATGTACATATCCGCGATTTTAACAgatatattttgtgtaaaaaaagtttttccttttttataaataaattcacTCTATTTATACATA

Function

GO:

id name namespace
GO:0021575 hindbrain morphogenesis biological_process
GO:0009790 embryo development biological_process
GO:0003677 DNA binding molecular_function
GO:0046983 protein dimerization activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU97946 lncRNA downstream 61445 9990196 ~ 9990507 (-) True G72633
TU97900 lncRNA downstream 94426 9955081 ~ 9957526 (-) False G72596
TU97901 lncRNA downstream 94426 9955081 ~ 9957526 (-) True G72596
TU97872 lncRNA downstream 193503 9856399 ~ 9858449 (-) False LOC103042271
TU97813 lncRNA downstream 250442 9801075 ~ 9801510 (-) False elp1
TU97984 lncRNA upstream 55702 10109736 ~ 10162458 (-) False LOC103046452
TU97990 lncRNA upstream 55702 10109736 ~ 10162484 (-) False LOC103046452
TU97992 lncRNA upstream 55702 10109736 ~ 10162484 (-) False LOC103046452
TU97995 lncRNA upstream 55702 10109736 ~ 10139345 (-) False LOC103046452
TU98038 lncRNA upstream 158546 10212580 ~ 10221634 (-) True G72689
XM_022672105.1 mRNA downstream 86233 9958520 ~ 9965719 (-) True LOC103036760
XM_022672097.1 mRNA downstream 149059 9857170 ~ 9902893 (-) False LOC103042271
XM_015600804.2 mRNA downstream 149059 9857170 ~ 9902893 (-) False LOC103042271
XM_022672098.1 mRNA downstream 149061 9857170 ~ 9902891 (-) False LOC103042271
XM_007228033.3 mRNA downstream 153936 9857170 ~ 9898016 (-) True LOC103042271
XM_022672108.1 mRNA upstream 19195 10073229 ~ 10093613 (-) True phrf1
XM_022672107.1 mRNA upstream 24718 10078752 ~ 10093613 (-) False phrf1
XM_022672106.1 mRNA upstream 24718 10078752 ~ 10093613 (-) False phrf1
XM_007228051.3 mRNA upstream 47739 10101773 ~ 10162441 (-) False LOC103046452
XM_015600855.2 mRNA upstream 47739 10101773 ~ 10162441 (-) False LOC103046452
TU97707 other downstream 826393 9222692 ~ 9225559 (-) True G72453
TU97699 other downstream 877643 9165878 ~ 9174309 (-) True G72449
TU97555 other downstream 1406351 8639538 ~ 8645601 (-) True G72336
TU96981 other downstream 2739026 7309775 ~ 7312926 (-) True G71862
TU96917 other downstream 2994309 7057110 ~ 7057643 (-) True G71826
TU98300 other upstream 1466853 11520887 ~ 11545223 (-) False LOC111193052
TU98292 other upstream 1466978 11521012 ~ 11545136 (-) False LOC111193052
XR_002650239.1 other upstream 1713475 11767509 ~ 11776139 (-) True LOC111193095
TU98666 other upstream 2510314 12564348 ~ 12564798 (-) False fbxo31
TU98667 other upstream 2510314 12564348 ~ 12564966 (-) False fbxo31

Expression Profile