RNA id: XR_002650238.1


Basic Information

Item Value
RNA id XR_002650238.1
length 1175
lncRNA type inter_gene
GC content 0.43
exon number 2
gene id LOC111193092
representative True

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 10097259 ~ 10099145 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GTTGGGGTAGCGCAAGTGGACTGAAGTTGAGCACCGCGCGCGCTTATAGAGCAAATCTCACTTTATTAATAAATCCCAGCGTTCGGACAAACTGTGCTACTTTTTGACCAGTTTGAGAAGCGGTGCCCTGCTGCCAGTCTGGACCCTTtatttggactgtgtgtgtttgattgatGCTATTTGACGGGGGAAAGTTGAGAGCGTGCTATGGCGCGCGCGTGCCTGCGTGCGTGTGCGAGTGAGATCTCTGAAAGCAGGTAAGCCACTGACTAACGCACATTGCGCCTCTTCTCCATTCCACTGTGCGTGTGACAGCGGCTAACCAGCTTTTGGACTTGGCTCTGGAGTTCTCCTGCGCTCCTGCTGACCGAGGCACTGCTTAAAGCCGCTCCCCGGATGGCCGAGGCCTTCTCCGCGCTGCTCCCTCCTCCTCTCCATTACTGTAGTACTTACTGTAAGTTAGCAGCCTACGTGCCACATGTCACAGTAACGCAGTAAGTCCACAGGCTGCCTATACGTCTCCCAGGGGTGGAGGGTGACGGGGCTTTCTGGAACAGGTAACCAGACCCTCATGTAACGTTTCCTTTTATGTAATAAACATTCTTTCCTGCTTTGActtgtgcagtgtgtagtgattaaaCTTTACATGTTTATTAACCCAATAACAGTTCAGCATTTTTGTCAGTGATATTGCATGCATagatcttgaggatttctattcaagcatcaattaaaaaggtttcatgtttaataagaaactttactgaaaatcataattgtaactgtattttaaattattaaaaaaaaaacattttatatcctCCAAAACTTTTGTTTCATTATGGTTGTCtaatttttatgtctatttttaaatttggggttgattcctgttactgatctggagagcttctccaagtgtccaaaGTTTTCAGAAGGTAAAAAACGTATTTTACTGCAgggaaaaagggttttgtatcatctACACTTGTAGCTCATGTACAGTCCAAGGCCTGTTAATAAACTTGAactcagttttaaaaaagtttaaaaaacttCAGCTCAGCACACAGTAGTAGTTAGCCAGCTAACCTACAGCAGCTGTAAGATACTTGTAACCATACTTATGCATTTTCTGCTTCTTCGACTTCATTAAAACTCACTTCATGTTTGAAACT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU97925 lncRNA upstream 38373 10058685 ~ 10058886 (+) True G72617
TU97923 lncRNA upstream 39441 10057483 ~ 10057818 (+) True G72615
TU97918 lncRNA upstream 68413 10028483 ~ 10028846 (+) True G72612
TU97912 lncRNA upstream 118837 9977975 ~ 9978422 (+) True G72606
TU97903 lncRNA upstream 127217 9968567 ~ 9970042 (+) False LOC103043718
TU98085 lncRNA downstream 472067 10571212 ~ 10626964 (+) False LOC103022150
TU98086 lncRNA downstream 472150 10571295 ~ 10626964 (+) False LOC103022150
TU98124 lncRNA downstream 698847 10797992 ~ 10798845 (+) True G72752
TU98125 lncRNA downstream 700401 10799546 ~ 10801772 (+) True G72753
TU98148 lncRNA downstream 909404 11008549 ~ 11015607 (+) True G72766
XM_007228043.3 mRNA upstream 24158 10065416 ~ 10073101 (+) True irf7
XM_007228044.3 mRNA upstream 24158 10065417 ~ 10073101 (+) False irf7
XM_007228041.3 mRNA upstream 119435 9974224 ~ 9977824 (+) True thg1l
XM_015600832.2 mRNA upstream 119435 9976375 ~ 9977824 (+) False thg1l
XM_007228038.3 mRNA upstream 127217 9968506 ~ 9970042 (+) True LOC103043718
XM_007228055.3 mRNA downstream 86592 10185737 ~ 10206122 (+) True hras
XM_007228054.3 mRNA downstream 108564 10207709 ~ 10212496 (+) True LOC103047796
XM_007228053.3 mRNA downstream 113418 10212563 ~ 10221827 (+) True tsg101
XM_022671910.1 mRNA downstream 173774 10272919 ~ 10626963 (+) True LOC103022150
XM_022672116.1 mRNA downstream 876576 10975721 ~ 11000591 (+) True igsf22
TU97933 other upstream 15119 10078579 ~ 10082140 (+) True G72621
TU97487 other upstream 947840 9142899 ~ 9149419 (+) True G72281
TU96877 other upstream 3211718 6881587 ~ 6885541 (+) True G71788
TU96736 other upstream 3558465 6525641 ~ 6538794 (+) True G71682
trnaa-agc_15 other upstream 4059511 6037676 ~ 6037748 (+) True trnaa-agc_15
trnar-ucg_4 other downstream 2504207 12603352 ~ 12603424 (+) True trnar-ucg_4
XR_002650241.1 other downstream 2772339 12871484 ~ 12897931 (+) False LOC103043719
TU99159 other downstream 4549684 14648829 ~ 14649551 (+) True G73533
XR_002650242.1 other downstream 4792389 14891534 ~ 14921003 (+) False rpgrip1l
TU99974 other downstream 6187531 16286676 ~ 16288329 (+) True G74169

Expression Profile