RNA id: XM_022671910.1


Basic Information

Item Value
RNA id XM_022671910.1
length 5890
RNA type mRNA
GC content 0.49
exon number 20
gene id LOC103022150
representative True

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 10272919 ~ 10626964 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

cggcaggcaggcaggcaggcagcgCCACTCGGGCTGGAGGGAAGCCGCGCTGCTCCTCGCTCCACGATGCTCCTCGGATCATAAACACTGCGCTCACCTGCTCCACAGGACAGGaggcaccaccaccaccaccacgacCACCGCAACTCTGCACTGCTGCGCTCACTGCCTCTCCGctcaggagaaagagagagagagagattaaaacacagaaatagagagagagaaagatagaaagagagacagagagagagagtaagcgaGTCACTGGCGAAGGGGATTGTGGAATAGACCAAAGCCTCCAGTCCTCCCTCCTCCAGTTTAAGAGGATTGCGCTGCTCTCCTGCTAACGACGCTCTCACCGCAGACATCCCACCGTCACGATGTCCTCGTGTGGGAAGGAAAACAGCGCTGCCCTGCACGCCAGTTACGTGGGACCGTACCGCTTGGAGAAGACCCTCGGGAAAGGGCAGACAGGTTTGGTGAAGCTCGGGGTGCACTGCGTAACATGTCAGAAAGTCGCCATAAAGATAGTCAACCGGGAGAAGCTCAGCGAGTCGGTTTTAATGAAGGTGGAGCGAGAAATCGCTATTCTCAAGCTAATAGAACACCCACACGTTTTAAAGTTGCACGATGTCTacgaaaataagaaatatttgtatCTGGTTTTAGAGCACGTGTCCGGGGGAGAATTGTTTGACTATTTGGTGAAAAAAGGAAGGTTAACACCCAAAGAGGCGCGCAAGTTCTTCAGACAGATCATGTCAGCTCTGGATTTCTGCCACAGTCACTCCATATGCCACAGGGACCTGAAGCCTGAGAACCTGCTGCTAGATGAGAAGAACAATATTAGGATAGCAGACTTCGGTATGGCCTCTCTGCAGGTTGGAGACAGCCTCCTGGAGACCAGCTGTGGTGTTAAATCGGGGGCTCTGCCATTTGATGACGATAATTTACGGAACTTGTTAGAAAAAGTGAAGTTGGGTGTGTTCCACATGCCACACTTCATTCCCCCAGACTGCCAGAACCTCCTACGAGGGATGATAGAGGTGGATGCCAGCAAACGACTAACGTTAGAACAGATCCAGAAGCACACGTGGTACATTGGAGGGAAGAATGAGCCTGAGCCTGAGCAGCCTGTGCCCAGGAAAGTGGCCATCAGAAGTCTGCCGTCAGCCGACGACATCGACCCGGATGTTCTGGAGAGCATGCACTCGCTCGGCTGCTTCCGGGACAAGAACAAGCTGATGAAGGACCTGCTGTCAGACGATGACAACCAGGAGAAGATGATCTATTTCCTCCTGCTGGACCGGAAGGAGAGGTACCCCAGCCATGAAGACCAAAACCTCCCCCCGCGCAATGATATAGATCCCCCAAGGAAGCGAGTAGACTCCCCCATGTTGAACCGGCACGGGAAGAGGAGGCCGGAGCGTAAGTCTATGGAGGTGTTGAGTGTGACGGACGGCGGATCACCTGTTCCAGCACGGAGAGCCATCGACATGACACAACACGGACAGAGtaaaacagtgTTCAGTAAAAGCTTGGATATCACTGAGGCCCACCTCAGGTGCAGCAAAGAGGAAAGATCACGCTCAATCAGCGGGGCTTCTTCAGGCCTTTCCACAAGTCCACTAAGCAGTCCACGGCCGGGTCGGAAGTTCTTTGTACCCCCACAGACATCCGAATTTTCCCTATCGCCCAACACTAGTCCCCTTGATTCCCCAGAACAGCCCTGTGCTAACCAAATTGAGGCTCATACACCAACGCCCAACTCATTGTCCCCAAATTCAGCATCCATGTCGCTCCTGGGTCCGTGCCCCAAGACCCAGACTCTTCCAGCCAAGCCTAAAGTTTCCGATAAGCCCTTACACGCCACTAGATCTAACCCATTACCAGACACTGAGCCCCAGCCCATTTCTGCGGCACGCTCAGAGCCTTCCACCCCATCCCAGCCGCAGCCGCCTCCCATTCCCGGCAGCCCTTTGGTGCGCCGGGTCACCCCCATTATCACCGCCCCTCCTCAACTCTCAGTGCCCTTCACACCCATCACGCCTCTCGCTCCAATCCGCCTACACCACTTCCACCCTGTACCCGGCTCTGACCACAGCACCAAATCTATCCCCACCATACAGGTGACCCCCCACCCCTCCCCCAGGGGCAGCCCTCTCCCCACCCCCAAAGGGACACCCGTCCACACACCCAAGGAGAGCCCGGCGGGTACTCCAACCCCGACACCTCCTCCAAGCCCCTCCATCGGGGGAATGCCCTGGAGGACACGCCTCAACTCCATCAAGAACAGCTTCCTGGGCTCGCCGCGCTTCCACCGCAGGAAACTGCAAGTTCCTACCCAAGAGGAGATGTCCAGCCTCACACCAGAGTCTTCCCCAGAACTTGCCAAAAAGTCATGGTTTGGTAATTTTATCAACCTGGAGAAAGAGGAGCAGATCTTCGTGGTGATCAAGGACAAGCCTCTGAGCTCCATCAAAGCCGACATAGTGCAAGCCTTTCTGTCGattccgAGTCTCAGTCACAGTGTGATATCTCAGACGAGTTTTCGGGCGGAGTATAAGTCCACAGCAGGCCCCACCGTCTTCCAGAAGCCTGTGAAGTTCCAGGTGGACATCACCTACACAGAGAGCAGCACAGCCACCAAGGAGAACGGCATCTACTCCGTCACCTTCACCCTGCTCTCAGGTCCAAGTCGGCGCTTCAAGCGAGTGGTGGAGACGATCCAGACACAGTTGTTAAGCACGCACGACCAGCCCGGAGTCCAGCAGCTGGCCGGCAGCCCATTGAGTAACTTCTTTGACGTAATTAAACAACTTTTTTCAGACGAGAAGAACGGCCAGGTGCCCCACCCACCTGGCACGCCCAACCGACACGCGCCTAACGCCCGGCGGCACGAGCCCGACCCTAGTGACTCTAAGTGCCCAGCGGGCAATGCCAGGGACAGTCCCCGGATGGTGGCCTCTGTTGGAACACAGGAGCAGCCCTAGAGAAGATTTCTGTTGTAGATCTGTAGATTgagctttttccttttttttgttttattttttcttttcttttttttttcttttgttcaacCTTAGTATAAGAATATCTAACTGATGTACTGTATGAACTGTCAGCAGTGATGTAAATAACCGAATAGACTTTTGTAATGATGGAAcgactgtataaaaaaaaaacacacatatgaaGAGGAGTTTTACATAGTAGAGCACATTCATACGCCCTCCCCCTGCTCTGTCCATCCATCCGCCAACCCAGCCCAGCCCAGCTCAGTCTAATCCCCCACACTTCCACCCACTCAATCACCCACCCATTGTCTGTCATTTGTGGCAAAGCCGCTTTTTTTCCTGTTGTATCCACTcttttttccttccttccttccttccttgctTCCTTTTCCTCCCTCACCTGTGTAATGACTTGTTTCTGCTGCCAGGAATTATCCAGAAAAGCTATTAACGCCCCCCATCCCGCATCCCTGCTCCGCCTGCGCCCGCCCGCACCAACCACACTCGCCGGCAGAGGGCGCCGTTCACCGCGAGACAATTTCCGAGGAAACTGGACCCTTCATCCCTCCTCCTCACCTTCACCTTTCCTCTCCAGATCATCTGTGCTCTTGAggataacacacatacacacacacatacatacatacatatacacacaaacatacacacagatacacacagtcTCCGATCAACTCTTCTCTCCAGGCCAGACTCCACCCCTTCCTCTTCGTCCTCCTCGCCCTCCTCGACCCTTCTTCAATCTCCTCATCCTCCAAGCTTCTGAACTTtaacacgcaaacacacacacacacacacactcacgaaGAACTTATGCGACAAGCCTTCAGCCTGCTCAACCACCTTACTTACACTACTTACATTAGGCTactcacatccacacacacacacgtgcacaattacacatacataaacacacacacacacggacactcTTACGGACATGCACAACTCTGGGATTtactcaaaaagaaaaaaaaaacgagagtgGAAACGGGGAGAAAAGACCTTAAGGATTGTCCCAAGGGGATGGAAACTCTTCACAGATTGTATTGTGTCATTTTTCGATGTTTCTTTTCAATGAAGATCCTAAAGCACTGCTGCAAATGGATGAAATGCTTATTCCCAACAAATATGTGGGTTGGGGATGGAATGGGATATTATAGGATGGGATGGGAGGAGATGGGAATAGGGTGGTGGGCATTGGGGCATTGGGGGTCGGGAAGATGAGTTAATATTCAGAGGAATGATGTCGGGTCCATGGAGATTATATACTTATGAATGATTTGTTCTGTTGTACAGACCAATACACTATGTATAACGAAATGTCTAGATGTAATACTAATGTTTAGTTATGTTGTAGATCCAGATTTAAATCGTGTGCTGTCACATAATTGCCATTTTTCCTTGTATTTTATCCATCCTTTATGAAACGTTTTATTTGACCTCATTGTTTCAGAGTAGCGGTTGTTGCTTCGTTCCGCCCGTTTTACGGTTCATATCTCATGTCTTGATGACCAGCAGTTATAGAGCACGGAAGAGGTGTATAATTCATACGtgactatttttgtatttttgtttgttttgttttgtttttttctctcttttatttattcatatctgGTCCACTTCTTCTTTATCTGTACCTTAATCCctaatttatttctattatcAGATTATGTATAGGAGAGGAAGACGTTAGATGATGAActgaatgttatttatttacagccCCGAGCGCTGGTATGCGCCGGGGCGACGCAGATTTGTTCATTTgaagaacacaaaaaaaagaaaagaaaagaacaaaaaagagatCTTTCTTATGTCTTGAGTTAAGAGAATTATGTGGACATATTTGAggatatttctttctttcctagCTTtgaatgagataaaaaaaaacatgtagtaTATGTTTAAAAACGGTAATTTAACAGTTATTTAAGAATGTAGTCTAGCCTCTTCGGGGAGGGAATGAGCCTcttcttgatatttgtcagttTCATTGTGTGTGTACAATGgattgagacaaaaaaaaaaaaaaacaggctcctCTTGAATCAGTTCTCTTGTAAATAGACTGATCCCACCTTCTTCAGACGTGAAGTTGAAGTGTCGGGTGGGCGGTTCCTGCTCTTTGCTTTTAACTTGTATTATTGCTGTGTGCATGCCAGACATTGGCTTTCCTTTGCATGGCGCTAGTGTAATTGTTAACCCCCCACCCTCCTCTCGCTACTCCTTCCCTCCGTTACGTGAGGCGTTGGGAGGGGGAGGACCCTCTCGactcctctcttttttctctgttattCTAGCCGCTGTTTttctgtccttctctctcttttcccgtCCTTTAGTGCACTGAGTTTTGAAATGCTTCCTCTCGTCTGTACCatgtacctctctctctctctcttctctctctctctcctctctctctctctcctctctctctctctctacaccctCTACCCTCACAAGGAAAGAAAACGATTCCATCCGTCTCGCGAGCCCTAGTTTACAGACACACTAagagttcctttttttttttcttttttttcccaatttcttttttttttgggacaaaacaaaaacaaagcaataCCTGTTGTTGATCATCCTGTTTTATACAGTAGTCTTCTTCTACTGAACATTAAGGCTCCAGACGACGAGCGAGATGAACACTTATCTTTGGCCGCTGCAGAGCAGGAACAAACCATGAAGCTGTAAAACCCCTTGTAACATAACTGTGAGCAATTTCAGATTTCAGAGcggaaacaaactaaaaaaaaatacgaaaagaaaaaaaaatcaaacaaaacataaCAATAAACTCATTCACTTActaggaa

Function

GO: NA

KEGG:

id description
K08796 BRSK; BR serine/threonine kinase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_002650238.1 lncRNA upstream 173774 10097259 ~ 10099145 (+) True LOC111193092
TU97959 lncRNA upstream 173775 10097277 ~ 10099144 (+) False LOC111193092
TU97925 lncRNA upstream 214033 10058685 ~ 10058886 (+) True G72617
TU97923 lncRNA upstream 215101 10057483 ~ 10057818 (+) True G72615
TU97918 lncRNA upstream 244073 10028483 ~ 10028846 (+) True G72612
TU98124 lncRNA downstream 171029 10797992 ~ 10798845 (+) True G72752
TU98125 lncRNA downstream 172583 10799546 ~ 10801772 (+) True G72753
TU98148 lncRNA downstream 381586 11008549 ~ 11015607 (+) True G72766
TU98149 lncRNA downstream 381853 11008816 ~ 11015607 (+) False G72766
TU98268 lncRNA downstream 557703 11184666 ~ 11184981 (+) True G72871
XM_007228053.3 mRNA upstream 51092 10212563 ~ 10221827 (+) True tsg101
XM_007228054.3 mRNA upstream 60423 10207709 ~ 10212496 (+) True LOC103047796
XM_007228055.3 mRNA upstream 66797 10185737 ~ 10206122 (+) True hras
XM_007228043.3 mRNA upstream 199818 10065416 ~ 10073101 (+) True irf7
XM_007228044.3 mRNA upstream 199818 10065417 ~ 10073101 (+) False irf7
XM_022672116.1 mRNA downstream 348758 10975721 ~ 11000591 (+) True igsf22
XM_022672118.1 mRNA downstream 402523 11029486 ~ 11034828 (+) False spty2d1
XM_007228061.3 mRNA downstream 402524 11029487 ~ 11034828 (+) True spty2d1
XM_007228060.3 mRNA downstream 402524 11029487 ~ 11034828 (+) False spty2d1
XM_022672117.1 mRNA downstream 402524 11029487 ~ 11034828 (+) False spty2d1
TU97933 other upstream 190779 10078579 ~ 10082140 (+) True G72621
TU97487 other upstream 1123500 9142899 ~ 9149419 (+) True G72281
TU96877 other upstream 3387378 6881587 ~ 6885541 (+) True G71788
TU96736 other upstream 3734125 6525641 ~ 6538794 (+) True G71682
trnaa-agc_15 other upstream 4235171 6037676 ~ 6037748 (+) True trnaa-agc_15
trnar-ucg_4 other downstream 1976389 12603352 ~ 12603424 (+) True trnar-ucg_4
XR_002650241.1 other downstream 2244521 12871484 ~ 12897931 (+) False LOC103043719
TU99159 other downstream 4021866 14648829 ~ 14649551 (+) True G73533
XR_002650242.1 other downstream 4264571 14891534 ~ 14921003 (+) False rpgrip1l
TU99974 other downstream 5659713 16286676 ~ 16288329 (+) True G74169

Expression Profile