RNA id: TU98124


Basic Information

Item Value
RNA id TU98124
length 208
lncRNA type inter_gene
GC content 0.64
exon number 2
gene id G72752
representative True

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 10797992 ~ 10798845 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

gctccatccagcagctgtaccacctcctctgctgtgaccacctgctctgctccacccggcagctgtaccacctcctctgctgggaccacctgctctactccacccggcagctgtaccacctcctctgctgtgaccacctgctctgctccatccggcagctgtaccacctcctctgctgtgaccacctgctctgctccacccggcagct

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU98085 lncRNA upstream 171028 10571212 ~ 10626964 (+) False LOC103022150
TU98086 lncRNA upstream 171028 10571295 ~ 10626964 (+) False LOC103022150
XR_002650238.1 lncRNA upstream 698847 10097259 ~ 10099145 (+) True LOC111193092
TU97959 lncRNA upstream 698848 10097277 ~ 10099144 (+) False LOC111193092
TU97925 lncRNA upstream 739106 10058685 ~ 10058886 (+) True G72617
TU98125 lncRNA downstream 701 10799546 ~ 10801772 (+) True G72753
TU98148 lncRNA downstream 209704 11008549 ~ 11015607 (+) True G72766
TU98149 lncRNA downstream 209971 11008816 ~ 11015607 (+) False G72766
TU98268 lncRNA downstream 385821 11184666 ~ 11184981 (+) True G72871
TU98272 lncRNA downstream 423929 11222774 ~ 11223004 (+) True G72875
XM_022671910.1 mRNA upstream 171029 10272919 ~ 10626963 (+) True LOC103022150
XM_007228053.3 mRNA upstream 576165 10212563 ~ 10221827 (+) True tsg101
XM_007228054.3 mRNA upstream 585496 10207709 ~ 10212496 (+) True LOC103047796
XM_007228055.3 mRNA upstream 591870 10185737 ~ 10206122 (+) True hras
XM_007228043.3 mRNA upstream 724891 10065416 ~ 10073101 (+) True irf7
XM_022672116.1 mRNA downstream 176876 10975721 ~ 11000591 (+) True igsf22
XM_022672118.1 mRNA downstream 230641 11029486 ~ 11034828 (+) False spty2d1
XM_007228061.3 mRNA downstream 230642 11029487 ~ 11034828 (+) True spty2d1
XM_007228060.3 mRNA downstream 230642 11029487 ~ 11034828 (+) False spty2d1
XM_022672117.1 mRNA downstream 230642 11029487 ~ 11034828 (+) False spty2d1
TU97933 other upstream 715852 10078579 ~ 10082140 (+) True G72621
TU97487 other upstream 1648573 9142899 ~ 9149419 (+) True G72281
TU96877 other upstream 3912451 6881587 ~ 6885541 (+) True G71788
TU96736 other upstream 4259198 6525641 ~ 6538794 (+) True G71682
trnaa-agc_15 other upstream 4760244 6037676 ~ 6037748 (+) True trnaa-agc_15
trnar-ucg_4 other downstream 1804507 12603352 ~ 12603424 (+) True trnar-ucg_4
XR_002650241.1 other downstream 2072639 12871484 ~ 12897931 (+) False LOC103043719
TU99159 other downstream 3849984 14648829 ~ 14649551 (+) True G73533
XR_002650242.1 other downstream 4092689 14891534 ~ 14921003 (+) False rpgrip1l
TU99974 other downstream 5487831 16286676 ~ 16288329 (+) True G74169

Expression Profile