RNA id: TU98125


Basic Information

Item Value
RNA id TU98125
length 547
lncRNA type inter_gene
GC content 0.63
exon number 2
gene id G72753
representative True

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 10799546 ~ 10801772 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

tgctctgctccacccggcagctgtaccacctcctctgtgGGGACCACTTGCTCTACTCCATCTGGCAgttgtaccacctcctctgctgggaccacctgctctgctccacccggcagctgtaccacctcctctgctgtgaccacctgctctgctccacccggcagctgtaccacctcctctgtgGGGACCACTTGCTCTACTCCATCTGGCAgttgtaccacctcctctgctgggaccacctgctctgctccacccggcagctgtaccacctcctctgctgggaccacctgctctgctccacccggcagctgtaccacctcctctgctgggaccacctgctctgctccacccggcagctgtaccacctcctctgtgGGGACCACTTGCTCTACTCCATCTGGCAgttgtaccacctcctctgctgggaccacctgctctgctccacccggcagctgtaccacctcctctgtgGGGACCACTTGCTCTACTCCATCTGGCAGTTGTACCACcccctctgctgtgaccacctgcactgctccacccggca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU98124 lncRNA upstream 701 10797992 ~ 10798845 (+) True G72752
TU98085 lncRNA upstream 172582 10571212 ~ 10626964 (+) False LOC103022150
TU98086 lncRNA upstream 172582 10571295 ~ 10626964 (+) False LOC103022150
XR_002650238.1 lncRNA upstream 700401 10097259 ~ 10099145 (+) True LOC111193092
TU97959 lncRNA upstream 700402 10097277 ~ 10099144 (+) False LOC111193092
TU98148 lncRNA downstream 206777 11008549 ~ 11015607 (+) True G72766
TU98149 lncRNA downstream 207044 11008816 ~ 11015607 (+) False G72766
TU98268 lncRNA downstream 382894 11184666 ~ 11184981 (+) True G72871
TU98272 lncRNA downstream 421002 11222774 ~ 11223004 (+) True G72875
TU98277 lncRNA downstream 423022 11224794 ~ 11226186 (+) True G72876
XM_022671910.1 mRNA upstream 172583 10272919 ~ 10626963 (+) True LOC103022150
XM_007228053.3 mRNA upstream 577719 10212563 ~ 10221827 (+) True tsg101
XM_007228054.3 mRNA upstream 587050 10207709 ~ 10212496 (+) True LOC103047796
XM_007228055.3 mRNA upstream 593424 10185737 ~ 10206122 (+) True hras
XM_007228044.3 mRNA upstream 726445 10065417 ~ 10073101 (+) False irf7
XM_022672116.1 mRNA downstream 173949 10975721 ~ 11000591 (+) True igsf22
XM_022672118.1 mRNA downstream 227714 11029486 ~ 11034828 (+) False spty2d1
XM_007228061.3 mRNA downstream 227715 11029487 ~ 11034828 (+) True spty2d1
XM_007228060.3 mRNA downstream 227715 11029487 ~ 11034828 (+) False spty2d1
XM_022672117.1 mRNA downstream 227715 11029487 ~ 11034828 (+) False spty2d1
TU97933 other upstream 717406 10078579 ~ 10082140 (+) True G72621
TU97487 other upstream 1650127 9142899 ~ 9149419 (+) True G72281
TU96877 other upstream 3914005 6881587 ~ 6885541 (+) True G71788
TU96736 other upstream 4260752 6525641 ~ 6538794 (+) True G71682
trnaa-agc_15 other upstream 4761798 6037676 ~ 6037748 (+) True trnaa-agc_15
trnar-ucg_4 other downstream 1801580 12603352 ~ 12603424 (+) True trnar-ucg_4
XR_002650241.1 other downstream 2069712 12871484 ~ 12897931 (+) False LOC103043719
TU99159 other downstream 3847057 14648829 ~ 14649551 (+) True G73533
XR_002650242.1 other downstream 4089762 14891534 ~ 14921003 (+) False rpgrip1l
TU99974 other downstream 5484904 16286676 ~ 16288329 (+) True G74169

Expression Profile