RNA id: TU98197



Basic Information


Item Value
RNA id TU98197
length 290
lncRNA type inter_gene
GC content 0.33
exon number 1
gene id G72806
representative True

Chromosome Information


Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 10629197 ~ 10629486 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence


gatcactctgtgtgtaatacatctatataatatatgagtttcacattctgaactgaattactgaaaaaagtaacatttgtaatgatattaatttttttttagatgaaccAGTGTGTTTACCTGCTCCAGAGAGTACTATTTTGTTGGTAGTCTCTATAGGGACCAGACCAATCCTAATTAGTCTTAATTAATTAGGGATTAATCCATGTCCTtgattatatataaaatgctgCATTGTCCAAGACCCTGCCTGGAAAATGTCCTATATGATGTTTTCTTACCTGTTGCCT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU98194 lncRNA downstream 2172 10571164 ~ 10627025 (-) True G72803
TU98191 lncRNA downstream 3926 10567904 ~ 10625271 (-) False G72802
TU98190 lncRNA downstream 3926 10567946 ~ 10625271 (-) True G72802
TU98038 lncRNA downstream 407563 10212580 ~ 10221634 (-) True G72689
TU97990 lncRNA downstream 466713 10109736 ~ 10162484 (-) False LOC103046452
TU98198 lncRNA upstream 96 10629582 ~ 10629824 (-) True G72807
TU98240 lncRNA upstream 403671 11033157 ~ 11034777 (-) True G72845
TU98242 lncRNA upstream 408022 11037508 ~ 11038145 (-) True G72847
TU98254 lncRNA upstream 449602 11079088 ~ 11132273 (-) True G72857
TU98281 lncRNA upstream 595293 11224779 ~ 11225954 (-) True LOC111193093
XM_007228052.3 mRNA downstream 396000 10223118 ~ 10233197 (-) True LOC103047177
XM_007228056.3 mRNA downstream 444351 10166327 ~ 10184846 (-) True lrrc56
XM_022672111.1 mRNA downstream 472637 10101773 ~ 10156560 (-) False LOC103046452
XM_022672114.1 mRNA upstream 1360 10630846 ~ 10717984 (-) True abtb2
XM_022672115.1 mRNA upstream 96038 10725524 ~ 10965182 (-) True b4galnt4
XM_007228058.3 mRNA upstream 379135 11008621 ~ 11028650 (-) True tmem86a
XM_015600899.2 mRNA upstream 420211 11049697 ~ 11084679 (-) False LOC103038359
XM_007228295.3 mRNA upstream 420211 11049697 ~ 11074392 (-) True LOC103038359
TU97707 other downstream 1403638 9222692 ~ 9225559 (-) True G72453
TU97699 other downstream 1454888 9165878 ~ 9174309 (-) True G72449
TU97555 other downstream 1983596 8639538 ~ 8645601 (-) True G72336
TU96981 other downstream 3316271 7309775 ~ 7312926 (-) True G71862
TU96917 other downstream 3571554 7057110 ~ 7057643 (-) True G71826
TU98300 other upstream 891401 11520887 ~ 11545223 (-) False LOC111193052
TU98292 other upstream 891526 11521012 ~ 11545136 (-) False LOC111193052
XR_002650239.1 other upstream 1138023 11767509 ~ 11776139 (-) True LOC111193095
TU98666 other upstream 1934862 12564348 ~ 12564798 (-) False fbxo31
TU98667 other upstream 1934862 12564348 ~ 12564966 (-) False fbxo31

Expression Profile