RNA id: TU98274


Basic Information

Item Value
RNA id TU98274
length 1078
lncRNA type inter_gene
GC content 0.37
exon number 1
gene id G72876
representative False

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 11224794 ~ 11226186 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ACTCAAGTATACAGATTCAAACTGCCTCATTCAAACTTTCAGTCATTTTTAGACAAAATTCAGTTCAATGGTGCAGACTGTCAGTTTTCCACACTTTTAAGGGTCTCACAGATCAggattattattctttattttgcagAGGACCCTTATTGCATTGTGCCATAGCATTGCTATATGAATACAGGAAATATAATGTAACAAACattgatataataaaaaaaacaatgagaggCACATGCATGATTTTCCAGAGCTAACTTTTGGTAGACTATGGTTATATACATTGCATCAggtcttttttgtcatttttgtgatagttttttttttttgtgtgtcggagtaaacagcaaaaacacagaaGGAAACTAATagtgaaaaaggaaaaatggaGGACAGCAGAGAGTGAGGGGTTCAGTTGTGCGATAACAAACTCATAACAGGCAACACaactctttttttactttatattatgtaataattatttatttatttatttattattattattttagtcttGAATTACTGCCGTAccttgtttctaataaaatggcttAATGGAGCTGAAGGAGGACaataaaaaagactaaaaattatgtttattttcatgTCCATAGCCATAAGACATGCCTCTTTTTACAGCAAgcttaaacacatttatagtAATAAGCCCCCCATCAGACACCTCAATTGAAtgtctcaataaaaaaaatctgattttgtgaaaaaactggatttgggccacttttccTGCTGTTTGATCTCAGCCTGTGTGAGAACATTTCCAGAAGGCAGAATTCCTCCTTTAAATAAGTCTGATTATGACCCATCACACCACCAAGCGATTCCGACAGAAACATCATCATTATCTCAAAACAGTTTTTATCATCTTCTGTCACGAGGGTCTGTAGGGGTTTAGAGACCGAACCATTCGGTGACCCCTCCTCTCCTGGGGTCTGGTTTCTGCCTCTGTCGCTCATCTTCCATGAATTTCTCCTGCATCTCctccacagaaccttcttcatgctttttttccttttcggGGAAGATATCTGGAAACTGGAAGGTCTGCTGCTGGCCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU98272 lncRNA upstream 1847 11222774 ~ 11223004 (+) True G72875
TU98268 lncRNA upstream 39870 11184666 ~ 11184981 (+) True G72871
TU98148 lncRNA upstream 209244 11008549 ~ 11015607 (+) True G72766
TU98149 lncRNA upstream 209244 11008816 ~ 11015607 (+) False G72766
TU98125 lncRNA upstream 423079 10799546 ~ 10801772 (+) True G72753
TU98287 lncRNA downstream 295084 11521012 ~ 11522661 (+) True G72882
TU98320 lncRNA downstream 341649 11567577 ~ 11625496 (+) True G72893
TU98332 lncRNA downstream 384542 11610470 ~ 11679822 (+) True G72905
TU98379 lncRNA downstream 587071 11812999 ~ 11818238 (+) True G72946
TU98442 lncRNA downstream 718049 11943977 ~ 11951765 (+) False G72993
XM_007228064.3 mRNA upstream 92574 11123179 ~ 11132277 (+) True LOC103024122
XM_007228063.3 mRNA upstream 108221 11105654 ~ 11116630 (+) True th
XM_007228059.3 mRNA upstream 176453 11037500 ~ 11048398 (+) True LOC103022764
XM_007228060.3 mRNA upstream 190023 11029487 ~ 11034828 (+) False spty2d1
XM_007228082.3 mRNA downstream 337404 11563332 ~ 11634593 (+) True LOC103028645
XM_022672122.1 mRNA downstream 347396 11573324 ~ 11634593 (+) False LOC103028645
XM_022672121.1 mRNA downstream 347396 11573324 ~ 11634593 (+) False LOC103028645
XM_007228084.3 mRNA downstream 394928 11620856 ~ 11634593 (+) False LOC103028645
XM_007228089.3 mRNA downstream 439887 11665815 ~ 11733195 (+) True LOC103029705
TU97933 other upstream 1142711 10078579 ~ 10082140 (+) True G72621
TU97487 other upstream 2075432 9142899 ~ 9149419 (+) True G72281
TU96877 other upstream 4339310 6881587 ~ 6885541 (+) True G71788
TU96736 other upstream 4686057 6525641 ~ 6538794 (+) True G71682
trnaa-agc_15 other upstream 5187103 6037676 ~ 6037748 (+) True trnaa-agc_15
trnar-ucg_4 other downstream 1377424 12603352 ~ 12603424 (+) True trnar-ucg_4
XR_002650241.1 other downstream 1645556 12871484 ~ 12897931 (+) False LOC103043719
TU99159 other downstream 3422901 14648829 ~ 14649551 (+) True G73533
XR_002650242.1 other downstream 3665606 14891534 ~ 14921003 (+) False rpgrip1l
TU99974 other downstream 5060748 16286676 ~ 16288329 (+) True G74169

Expression Profile