RNA id: TU98281


Basic Information

Item Value
RNA id TU98281
length 1176
lncRNA type sense_over
GC content 0.36
exon number 1
gene id LOC111193093
representative True

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 11224779 ~ 11225954 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TTAAAGGAATTCCTGCTTTCCCTACAGGGCCAGCAGCAGACCTTCCAGTTTCCAGATATCTTCCccgaaaaggaaaaaaagcatgaagaaggttctgtggagGAGATGCAGGAGAAATTCATGGAAGATGAGCGACAGAGGCAGAAACCAGACCCCAGGAGAGGAGGGGTCACCGAATGGTTCGGTCTCTAAACCCCTACAGACCCTCGTGACAGAAGATGATAAAAACTGTTTTGAGATAATGATGATGTTTCTGTCGGAATCGCTTGGTGGTGTGATGGGTCATAATCAGACTTATTTAAAGGAGGAATTCTGCCTTCTGGAAATGTTCTCACACAGGCTGAGATCAAACAGCAggaaaagtggcccaaatccagttttttcacaaaatcagattttttttattgagacaTTCAATTGAGGTGTCTGATGGGGGGCTTATTactataaatgtgtttaagcTTGCTGTAAAAAGAGGCATGTCTTATGGCTATGGAcatgaaaataaacataatttttagtcttttttattGTCCTCCTTCAGCTCCATTaagccattttattagaaacaaggTACGGCAGTAATTCaagactaaaataataataataaataaataaataaataattattacataatataaagtaaaaaaagagttGTGTTGCCTGTTATGAGTTTGTTATCGCACAACTGAACCCCTCACTCTCTGCTGTCCtccatttttcctttttcactATTAGTTTCCttctgtgtttttgctgtttactccgacacacaaaaaaaaaaaactatcacaaaaatgacaaaaaagaccTGATGCAATGTATATAACCATAGTCTACCAAAAGTTAGCTCTGGAAAATCATGCATGTGcctctcattgttttttttattatatcaatGTTTGTTACATTATATTTCCTGTATTCATATAGCAATGCTATGGCACAATGCAATAAGGGTCCTctgcaaaataaagaataataatccTGATCTGTGAGACCCTTAAAAGTGTGGAAAACTGACAGTCTGCACCATTGAACTGAATTTTGTCTAAAAATGACTGAAAGTTTGAATGAGGCAGTTTGAATCTGTATACTTGAGTTTATCTTCCATTAAAAGATGGAAACATTGCAGTgcgtctctgtctctgtttttatttaagagCTTTTAGACT

Function

GO: NA

KEGG:

id description
ko03010 Ribosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU98254 lncRNA downstream 92506 11079088 ~ 11132273 (-) True G72857
TU98242 lncRNA downstream 186634 11037508 ~ 11038145 (-) True G72847
TU98240 lncRNA downstream 190002 11033157 ~ 11034777 (-) True G72845
TU98198 lncRNA downstream 594955 10629582 ~ 10629824 (-) True G72807
TU98197 lncRNA downstream 595293 10629197 ~ 10629486 (-) True G72806
TU98284 lncRNA upstream 5225 11231179 ~ 11231678 (-) True G72881
TU98401 lncRNA upstream 468724 11694678 ~ 11733149 (-) True G72967
TU98410 lncRNA upstream 508190 11734144 ~ 11734846 (-) True G72974
TU98475 lncRNA upstream 822672 12048626 ~ 12050542 (-) True LOC111193053
TU98496 lncRNA upstream 899582 12125536 ~ 12126823 (-) True G73030
XM_015600899.2 mRNA downstream 140100 11049697 ~ 11084679 (-) False LOC103038359
XM_007228295.3 mRNA downstream 150387 11049697 ~ 11074392 (-) True LOC103038359
XM_007228058.3 mRNA downstream 196129 11008621 ~ 11028650 (-) True tmem86a
XM_022672115.1 mRNA downstream 259597 10725524 ~ 10965182 (-) True b4galnt4
XM_022672114.1 mRNA downstream 506795 10630846 ~ 10717984 (-) True abtb2
XM_022671911.1 mRNA upstream 295878 11521832 ~ 11545246 (-) True LOC111193052
XM_022672127.1 mRNA upstream 511329 11737283 ~ 11739371 (-) True kcnj11
XM_022672126.1 mRNA upstream 514008 11739962 ~ 11804035 (-) False abcc8
XM_022672124.1 mRNA upstream 514008 11739962 ~ 11804035 (-) True abcc8
XM_022672125.1 mRNA upstream 514008 11739962 ~ 11804033 (-) False abcc8
TU97707 other downstream 1999220 9222692 ~ 9225559 (-) True G72453
TU97699 other downstream 2050470 9165878 ~ 9174309 (-) True G72449
TU97555 other downstream 2579178 8639538 ~ 8645601 (-) True G72336
TU96981 other downstream 3911853 7309775 ~ 7312926 (-) True G71862
TU96917 other downstream 4167136 7057110 ~ 7057643 (-) True G71826
TU98300 other upstream 294933 11520887 ~ 11545223 (-) False LOC111193052
TU98292 other upstream 295058 11521012 ~ 11545136 (-) False LOC111193052
XR_002650239.1 other upstream 541555 11767509 ~ 11776139 (-) True LOC111193095
TU98666 other upstream 1338394 12564348 ~ 12564798 (-) False fbxo31
TU98667 other upstream 1338394 12564348 ~ 12564966 (-) False fbxo31

Expression Profile