RNA id: TU98332


Basic Information

Item Value
RNA id TU98332
length 453
lncRNA type read_through
GC content 0.37
exon number 2
gene id G72905
representative True

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 11610470 ~ 11679822 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

aaataacagtatTCATTCACTTGACCAGCCTTAAGCTTTTATacctctatatttgcactactgtttatacaggttttgtttatactggtactgtcattccctctataatccccctccccccatcactattgcacctTTGTCTTGTTACTCTTGTCTCACatatgtctatatctgtgaccttgttgtacagtatatgcactgtctctcattcttttattatttataattttattttgctgtacATGCTGTAgctttgggaaggagagtaacataaTTTTAATCCTCTGTAtatcctgtacatatgcagtattgacaataaaactacttgacttgacttcttGCCAAACCCTCTTAAAGGACTTGATCTAAAACAACACATAATCGCCAGCACTCATTCCTCATTCCACTCAGTTCTAACACTGGGCCTTAGCATACCCAtctgtgcagagagag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU98287 lncRNA upstream 87809 11521012 ~ 11522661 (+) True G72882
TU98277 lncRNA upstream 384284 11224794 ~ 11226186 (+) True G72876
TU98274 lncRNA upstream 384542 11224851 ~ 11225928 (+) False G72876
TU98272 lncRNA upstream 387466 11222774 ~ 11223004 (+) True G72875
TU98268 lncRNA upstream 425489 11184666 ~ 11184981 (+) True G72871
TU98379 lncRNA downstream 133177 11812999 ~ 11818238 (+) True G72946
TU98442 lncRNA downstream 264155 11943977 ~ 11951765 (+) False G72993
TU98443 lncRNA downstream 264155 11943977 ~ 11951765 (+) True G72993
TU98444 lncRNA downstream 264155 11943977 ~ 11951765 (+) False G72993
TU98446 lncRNA downstream 264155 11943977 ~ 11951765 (+) False G72993
XM_007228064.3 mRNA upstream 478193 11123179 ~ 11132277 (+) True LOC103024122
XM_007228063.3 mRNA upstream 493840 11105654 ~ 11116630 (+) True th
XM_007228059.3 mRNA upstream 562072 11037500 ~ 11048398 (+) True LOC103022764
XM_007228060.3 mRNA upstream 575642 11029487 ~ 11034828 (+) False spty2d1
XM_007228088.3 mRNA downstream 14736 11694558 ~ 11733195 (+) False LOC103029705
XM_007228087.3 mRNA downstream 17979 11697801 ~ 11733195 (+) False LOC103029705
XM_007228086.3 mRNA downstream 38989 11718811 ~ 11733195 (+) False LOC103029705
XM_022672134.1 mRNA downstream 246165 11925987 ~ 11938380 (+) True LOC103038976
XM_007228102.3 mRNA downstream 259702 11939524 ~ 11941817 (+) True myod1
TU97933 other upstream 1528330 10078579 ~ 10082140 (+) True G72621
TU97487 other upstream 2461051 9142899 ~ 9149419 (+) True G72281
TU96877 other upstream 4724929 6881587 ~ 6885541 (+) True G71788
TU96736 other upstream 5071676 6525641 ~ 6538794 (+) True G71682
trnaa-agc_15 other upstream 5572722 6037676 ~ 6037748 (+) True trnaa-agc_15
trnar-ucg_4 other downstream 923530 12603352 ~ 12603424 (+) True trnar-ucg_4
XR_002650241.1 other downstream 1191662 12871484 ~ 12897931 (+) False LOC103043719
TU99159 other downstream 2969007 14648829 ~ 14649551 (+) True G73533
XR_002650242.1 other downstream 3211712 14891534 ~ 14921003 (+) False rpgrip1l
TU99974 other downstream 4606854 16286676 ~ 16288329 (+) True G74169

Expression Profile