RNA id: TU98401


Basic Information

Item Value
RNA id TU98401
length 2389
lncRNA type inter_gene
GC content 0.46
exon number 5
gene id G72967
representative True

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 11694678 ~ 11733149 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

taataaattgcttTAACTTAgataattaaaatacataaaagaaaGCCAGAACTTAAGAACCCTGCAAATAAAaggtcaaaaataaataaaataaaaaaagaggaaacaaaTCTCCCTCCATAGAGGCTAATCTGAAGTTATCCACTTGCGATTTTCTTTACATAGTTACAATCTATTTCTTATAACTGCAAGCAGAATGTGCATGTTCTACACACGTGTAGCCTTAATGTTCATGACCTCTttgataaacataaaaaataaaaacaaactgtaaagaaaaagagaataaaaggcTGCAACCCTGGAGGATGGATCCTCAATGCATTGCCACAAAAACCATCTGCACTGTCTATTCACACATCAACCAATCATCAGTCTCACCCATTCTGAATGCAATCATAGCACATTCTACCAGCTTCACGCTGATcactgagtgtgagagagaagagatgaCCATACCGCTCATCATCAGCCTTCTTTCTCCAGGACATTCATTTCTGGTGTTCAACcttttattatcatcatcatgtGACCTTTCTAACGTTTCAGAACATCACTGTGAATGAGGGAATgggaagagagggaaagagatagagggagagggaAAGAAGGGAGGAGGAGATTGGAGGGTTAAGGGGCGATGAAGAGACGACAGAACAAGTGAACTGGAACCGGCTTCATGAAGGAATGAGTGTTTATGGTTTAGTCTCAGTCATGGAGAACTAACAGTCAGGGCAGGTTAGGTTCTATGAGTTTATTTAATACATCACTAACACAGCTCTTCAATCCTGGACCTGGTGCGATTTAAGAGGATTCCCTGCACACTCACTGAAACGCTGAAAGAGCTCATTAATGAGCTGAATCGGATGTGAGAAGAGAAAGCCATACATTAACAGGGCAGAGGGGCACCAGGACCAGAATTGAGAACCCTGGTCTAATAGCAGAGACAGTGCTTTAGCCTTGAGCCGATTTATGCTTCTGCATGGAGTGTGCTGCATACCTACACCATAGCCTTTGCTATAGCCTGGCATGCACTTCCCTAAAATGTAACTATGCAACATGACGACCGCAATATCTGTAATTGGCCATTGAGTATTGGATTCCAGCATTTCTACCTCCGCAGTGTCTCTGCAGAGTGATGCAGACAACAGTGCAGGCCACCTGCGCAGGCTATGCGTCGACTCAAAGCAGAACTACTAACCGGCTTTCTGTCTCATGCATTAGGCAATGCGAATGCATCCAAACTGAAAACAGCCATCCTCACAAACCTCAGATCCACCAAGAATGTGcacgaaaataaataaaaacaaaaacataaaagcgctaaaaaataaaataaaaagaatagaaaTTGTTCCTAGTTAGATTGCAGGTAGGTAGACATGTGGGGCTATTTGTTATTGGGGGGGAATTCCACACCAGTGTGCACTGGTCAGAGGCACTGCCTTCCCCcaagctccgccccttcctcTGATTCTTACGGTGGTCAAAAAAAGTCATCAGGATGTCAAAGGGTCTGCGAGTCCTGCCAGCAGCCCGGCCCTGCCCAGGGCCTCCTCTCACTccctcttcatcctcctcttcctccgcGCTAAAGGGGCTCGGTGGCTGTGCGGGCGGCTCATCTCTCAGTCACGTGGTTCTGTTGTGGGGAGGGGGGCAGGGGGGTGCACAGCACTTCTGACAGGTCGTCCATGATGCACGTCTCCTTAGGGTCGACCAGATTGAACTCCCTCACAAAGACGATGAAATGTGCGTACAGCGTGTTCAAGTGTCCCTGCAGCTCCAGCGCCACCGTCTCCTTAAAGTGTGCCCAGTAGATGTGCGCCAGCACGTGGAACAGGTACCGGCAGATCTTCTTCACCAGAGACTCGAACGAGTTGGGGAACTCTTTACCGTATTTCGTTGGGAAGATTTCTTCATCTGTCACTAGTTTCTGCACTAAACTCATGACAAAGTCCACATACTGAGGCGCTGTGCACTTGGTCTTCTTCCCCCTCTCATCATACCAGTAGTATATTGTATTACAGGCCGTCATGGCTAGACATGTGTCACCAGTGCAAAACTCTGAGATTGTGCTATACTGCAGGTTGATGAGATTGAAAAATGTTGTTGTGTTGCTGGCAAGCCATTCATTGAGGTCTATCTCTCTGGGTAACACCACCAGCTCTTTGAGGTCGAAGTCCACCACCCGCACTTTAGTGTACTCCGGCTCCAAATAGTGCTTCTTCTCCTCGGCTGGAGGCTTCTTTCCATTGGGCTTCGTTTTAGACTTcCTATTCAAAGTATACGAGCCATTTCTTTTAAACCTCATCCTGAAACACAGCAGCGAGTCGACGAGCTCCAGAATTGTTCAAATTCTCGCTTTTCTCCTCTCCACCGGCCCTCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU98284 lncRNA downstream 463000 11231179 ~ 11231678 (-) True G72881
TU98281 lncRNA downstream 468724 11224779 ~ 11225954 (-) True LOC111193093
TU98254 lncRNA downstream 562405 11079088 ~ 11132273 (-) True G72857
TU98242 lncRNA downstream 656533 11037508 ~ 11038145 (-) True G72847
TU98240 lncRNA downstream 659901 11033157 ~ 11034777 (-) True G72845
TU98410 lncRNA upstream 995 11734144 ~ 11734846 (-) True G72974
TU98475 lncRNA upstream 315477 12048626 ~ 12050542 (-) True LOC111193053
TU98496 lncRNA upstream 392387 12125536 ~ 12126823 (-) True G73030
TU98587 lncRNA upstream 461424 12194573 ~ 12196578 (-) True G73098
TU98588 lncRNA upstream 461424 12194573 ~ 12196578 (-) False G73098
XM_022671911.1 mRNA downstream 149432 11521832 ~ 11545246 (-) True LOC111193052
XM_022672120.1 mRNA downstream 468750 11224820 ~ 11225928 (-) False LOC111193093
XM_015600899.2 mRNA downstream 609999 11049697 ~ 11084679 (-) False LOC103038359
XM_007228295.3 mRNA downstream 620286 11049697 ~ 11074392 (-) True LOC103038359
XM_007228058.3 mRNA downstream 666028 11008621 ~ 11028650 (-) True tmem86a
XM_022672127.1 mRNA upstream 4134 11737283 ~ 11739371 (-) True kcnj11
XM_022672126.1 mRNA upstream 6813 11739962 ~ 11804035 (-) False abcc8
XM_022672124.1 mRNA upstream 6813 11739962 ~ 11804035 (-) True abcc8
XM_022672125.1 mRNA upstream 6813 11739962 ~ 11804033 (-) False abcc8
XM_015600969.2 mRNA upstream 72668 11805817 ~ 11834731 (-) False ush1c
TU98300 other downstream 149455 11520887 ~ 11545223 (-) False LOC111193052
TU98292 other downstream 149542 11521012 ~ 11545136 (-) False LOC111193052
TU97707 other downstream 2469119 9222692 ~ 9225559 (-) True G72453
TU97699 other downstream 2520369 9165878 ~ 9174309 (-) True G72449
TU97555 other downstream 3049077 8639538 ~ 8645601 (-) True G72336
XR_002650239.1 other upstream 34360 11767509 ~ 11776139 (-) True LOC111193095
TU98666 other upstream 831199 12564348 ~ 12564798 (-) False fbxo31
TU98667 other upstream 831199 12564348 ~ 12564966 (-) False fbxo31
TU98668 other upstream 831199 12564348 ~ 12564874 (-) False fbxo31
TU98709 other upstream 877685 12610834 ~ 12621356 (-) True G73172

Expression Profile