RNA id: TU98410


Basic Information

Item Value
RNA id TU98410
length 703
lncRNA type inter_gene
GC content 0.36
exon number 1
gene id G72974
representative True

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 11734144 ~ 11734846 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

aaatagcaaaatcagagaaactgattcagaaactgaagtggtctcttatttttttccagagctgtatatctgctGTATGTTAAAAGTTCACTGTTCTGCATTAGGATTTATTGCTAAAAAATAAACCTAGCGTTTTAAGGgttaatgcacaaaaaagtacaaaataatatgaattttaatatCTTGGAGAAACTGAGTTTCATATGTTGTATATCACAGAACATATGCAGCGTTCTGTAGCCAGATATAGATGCGGGTCAAGGCTGAGATGATGTGTTCAGGGCTGAGGCAGGTTTTCTTGCTATTGCTGAAGGTCAGTGCCACGGCAAAGGAAGCCATGAAATGTGATCTGCATCAAGGAGACTGCAGCAGAACCCACAACTGAACACACTGTATCTGCACAACAGACCTATagagattttatatttatttggccaccaaatatccactattatttaaaatatttttattttcactctgttCCAGACCTGTGAGTAATCTGTCTGTTATGAAAAAagcaatattttgtatttgcttCTCTTTTTAATACACCCCAGGCTTCATAAATGTCATGAATTCCCAAAGTGCTCTGCTGTCAAATATTAGATTTTCTGTCTCTGAATATCAGACATGCATGTTTGAATGCAGATTTCTCTCAGGGTATTAGATGCTtgaatgcattatattattagTCTGCCATAGC

Function

GO:

id name namespace
GO:0009259 ribonucleotide metabolic process biological_process
GO:0009260 ribonucleotide biosynthetic process biological_process
GO:1901293 nucleoside phosphate biosynthetic process biological_process
GO:0006164 purine nucleotide biosynthetic process biological_process
GO:0009117 nucleotide metabolic process biological_process
GO:0009123 nucleoside monophosphate metabolic process biological_process
GO:0009124 nucleoside monophosphate biosynthetic process biological_process
GO:0009126 purine nucleoside monophosphate metabolic process biological_process
GO:0009127 purine nucleoside monophosphate biosynthetic process biological_process
GO:0046390 ribose phosphate biosynthetic process biological_process
GO:0055086 nucleobase-containing small molecule metabolic process biological_process
GO:0019637 organophosphate metabolic process biological_process
GO:0006753 nucleoside phosphate metabolic process biological_process
GO:0009141 nucleoside triphosphate metabolic process biological_process
GO:0009142 nucleoside triphosphate biosynthetic process biological_process
GO:0009152 purine ribonucleotide biosynthetic process biological_process
GO:0090407 organophosphate biosynthetic process biological_process
GO:1901135 carbohydrate derivative metabolic process biological_process
GO:1901137 carbohydrate derivative biosynthetic process biological_process
GO:0009156 ribonucleoside monophosphate biosynthetic process biological_process
GO:0072522 purine-containing compound biosynthetic process biological_process
GO:0009161 ribonucleoside monophosphate metabolic process biological_process
GO:0009165 nucleotide biosynthetic process biological_process
GO:0009167 purine ribonucleoside monophosphate metabolic process biological_process
GO:0009168 purine ribonucleoside monophosphate biosynthetic process biological_process
GO:0006793 phosphorus metabolic process biological_process
GO:0006796 phosphate-containing compound metabolic process biological_process
GO:0019693 ribose phosphate metabolic process biological_process
GO:0009199 ribonucleoside triphosphate metabolic process biological_process
GO:0009201 ribonucleoside triphosphate biosynthetic process biological_process
GO:0016310 phosphorylation biological_process
GO:0034404 nucleobase-containing small molecule biosynthetic process biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU98401 lncRNA downstream 995 11694678 ~ 11733149 (-) True G72967
TU98284 lncRNA downstream 502466 11231179 ~ 11231678 (-) True G72881
TU98281 lncRNA downstream 508190 11224779 ~ 11225954 (-) True LOC111193093
TU98254 lncRNA downstream 601871 11079088 ~ 11132273 (-) True G72857
TU98242 lncRNA downstream 695999 11037508 ~ 11038145 (-) True G72847
TU98475 lncRNA upstream 313780 12048626 ~ 12050542 (-) True LOC111193053
TU98496 lncRNA upstream 390690 12125536 ~ 12126823 (-) True G73030
TU98587 lncRNA upstream 459727 12194573 ~ 12196578 (-) True G73098
TU98588 lncRNA upstream 459727 12194573 ~ 12196578 (-) False G73098
TU98619 lncRNA upstream 768017 12502863 ~ 12539230 (-) True G73119
XM_022671911.1 mRNA downstream 188898 11521832 ~ 11545246 (-) True LOC111193052
XM_022672120.1 mRNA downstream 508216 11224820 ~ 11225928 (-) False LOC111193093
XM_015600899.2 mRNA downstream 649465 11049697 ~ 11084679 (-) False LOC103038359
XM_007228295.3 mRNA downstream 659752 11049697 ~ 11074392 (-) True LOC103038359
XM_007228058.3 mRNA downstream 705494 11008621 ~ 11028650 (-) True tmem86a
XM_022672127.1 mRNA upstream 2437 11737283 ~ 11739371 (-) True kcnj11
XM_022672126.1 mRNA upstream 5116 11739962 ~ 11804035 (-) False abcc8
XM_022672124.1 mRNA upstream 5116 11739962 ~ 11804035 (-) True abcc8
XM_022672125.1 mRNA upstream 5116 11739962 ~ 11804033 (-) False abcc8
XM_015600969.2 mRNA upstream 70971 11805817 ~ 11834731 (-) False ush1c
TU98300 other downstream 188921 11520887 ~ 11545223 (-) False LOC111193052
TU98292 other downstream 189008 11521012 ~ 11545136 (-) False LOC111193052
TU97707 other downstream 2508585 9222692 ~ 9225559 (-) True G72453
TU97699 other downstream 2559835 9165878 ~ 9174309 (-) True G72449
TU97555 other downstream 3088543 8639538 ~ 8645601 (-) True G72336
XR_002650239.1 other upstream 32663 11767509 ~ 11776139 (-) True LOC111193095
TU98666 other upstream 829502 12564348 ~ 12564798 (-) False fbxo31
TU98667 other upstream 829502 12564348 ~ 12564966 (-) False fbxo31
TU98668 other upstream 829502 12564348 ~ 12564874 (-) False fbxo31
TU98709 other upstream 875988 12610834 ~ 12621356 (-) True G73172

Expression Profile