RNA id: TU98493


Basic Information

Item Value
RNA id TU98493
length 1226
lncRNA type inter_gene
GC content 0.41
exon number 1
gene id G73029
representative True

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 12125633 ~ 12126858 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GCGGAGGCACTAGGCCCAGCTCTGCAAGCTGAGATGGAGGTAAAGGAGGCTATTCAGATCCAGCAGAGTGAGAACGGAGAAGTGGTCCAGATCCAGATGCCCGTCAACACTGTGGGCACCTGAGACACCAGCCCAtgagccctctctctctcacacacacacacacacaccacagtgctcctacaaatacacacactagCATGATTCTgctgctgaactgcttgagtgagcgagagagagagaacctgaGACTGAAAAGTGTGGACACTCAAACTCAAACAGAATCAATGACTTGTGTCTGCAACCATGAGCTAAAGCCAGGCAAAGAGTcttaaatcaaacaaacactGCACAAATTCCCTTTGTGTCAGCTTGTCTACTGGCAATCTCCTGACAATCACAGCCTGTTAAAAGCTCCTTCAGCTTAGTAATACAATATCAGTGTTGGCTGCACCGCAGGCTCTTCGATGCTTGTGCGTGTGTTACAGGTTCTGGCCCAGCAGTGGACAGGAGAAATTAGCTTTATTTTCCTTCTTCAcctccttctccttcttttttcttcttcttcttcttcttcttcttcttctgctttttcCATCACTCCAGTTCCTCAACTGCACAGGATGGGTTTATTTAACTCGAGCTTCAAGGAGCGTGCCTAGCTATTAGGCTTCAAGCTGCTTGCCTAATCTCCTTTCATTAGGACAAAGACACTGTTCTGTAAAGACTGAAGCTTGCTAATGAGAGCTTTACTTCTTATGTTACCTCTAATACATACCGATCAGCTAAACCAGCCCATGGTTGTTGAGTATTGTTTCATGAAATAagtgtaatttaataattttctttcattttttgtttttcttttttttttttttttttgctgttgtcattctttttttttttttttttttttttttttaatgagggCCTGCCCTTGTTCTGTACCCGTTCTACAGCTTATGTTCATAAATCTTGGTTATCCCACAGAAGTGGCTTGTTTGTTTTAGATGCTTTATTGtaacaacataaataaatatttgtggcCCTCTTTAAAGAGACAGTTGATAAAAAGCTGCACATAGAGaatatgaaaaagtatttggcaGTGACGGTGACCATGTCTATGTATAGAAAGTGTATAGAAAGTATGagttgcttgtttatcttgtcgGTGTGCGTGCATATGAGCGTGTGAATTAATAAATGACTGTCATTGCCATGTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU98441 lncRNA upstream 75093 12033083 ~ 12050540 (+) True G72992
TU98456 lncRNA upstream 146751 11978208 ~ 11978882 (+) True G73001
TU98442 lncRNA upstream 173868 11943977 ~ 11951765 (+) False G72993
TU98497 lncRNA downstream 3704 12130562 ~ 12130798 (+) True G73031
TU98513 lncRNA downstream 67714 12194572 ~ 12196710 (+) True G73045
TU98514 lncRNA downstream 67714 12194572 ~ 12196710 (+) False G73045
TU98551 lncRNA downstream 318835 12445693 ~ 12448514 (+) True G73081
TU98553 lncRNA downstream 323628 12450486 ~ 12456004 (+) True G73082
XM_015600993.2 mRNA upstream 161849 11955624 ~ 11963784 (+) True LOC103034044
XM_007228102.3 mRNA upstream 183816 11939524 ~ 11941817 (+) True myod1
XM_007228103.3 mRNA upstream 183816 11939524 ~ 11941817 (+) False myod1
XM_022672134.1 mRNA upstream 187253 11925987 ~ 11938380 (+) True LOC103038976
XM_007228086.3 mRNA upstream 392438 11718811 ~ 11733195 (+) False LOC103029705
XM_022672140.1 mRNA downstream 238507 12365365 ~ 12417357 (+) True znf469
XM_022672142.1 mRNA downstream 331687 12458545 ~ 12485409 (+) False LOC103039191
XM_007228121.3 mRNA downstream 331690 12458548 ~ 12485409 (+) True LOC103039191
XM_022672141.1 mRNA downstream 346716 12473574 ~ 12485409 (+) False LOC103039191
XM_007228122.3 mRNA downstream 346987 12473845 ~ 12485409 (+) False LOC103039191
TU97933 other upstream 2043493 10078579 ~ 10082140 (+) True G72621
TU97487 other upstream 2976214 9142899 ~ 9149419 (+) True G72281
TU96877 other upstream 5240092 6881587 ~ 6885541 (+) True G71788
TU96736 other upstream 5586839 6525641 ~ 6538794 (+) True G71682
trnaa-agc_15 other upstream 6087885 6037676 ~ 6037748 (+) True trnaa-agc_15
trnar-ucg_4 other downstream 476494 12603352 ~ 12603424 (+) True trnar-ucg_4
XR_002650241.1 other downstream 744626 12871484 ~ 12897931 (+) False LOC103043719
TU99159 other downstream 2521971 14648829 ~ 14649551 (+) True G73533
XR_002650242.1 other downstream 2764676 14891534 ~ 14921003 (+) False rpgrip1l
TU99974 other downstream 4159818 16286676 ~ 16288329 (+) True G74169

Expression Profile