RNA id: TU98496


Basic Information

Item Value
RNA id TU98496
length 1288
lncRNA type inter_gene
GC content 0.41
exon number 1
gene id G73030
representative True

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 12125536 ~ 12126823 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CTCATATGCACGCACACcgacaagataaacaagcaactCATACTTTCTATACACTTTCTATACATAGACATGGTCACCGTCACtgccaaatactttttcatattCTCTATGTGCAGCTTTTTATCAACTGTCTCTTTAAAGAGGgccacaaatatttatttatgttgttaCAATAAAGCATCTAAAACAAACAAGCCACTTCTGTGGGATAACCAAGATTTATGAACATAAGCTGTAGAACGGGTACAGAACAAGGGCAGGccctcattaaaaaaaaaaaaaaaaaaaaaaaaaaagaatgacaacagcaaaaaaaaaaaaaaaaaagaaaaacaaaaaatgaaagaaaattattaaattacactTATTTCATGAAACAATACTCAACAACCATGGGCTGGTTTAGCTGATCGGTATGTATTAGAGGTAACATAAGAAGTAAAGCTCTCATTAGCAAGCTTCAGTCTTTACAGAACAGTGTCTTTGTCCTAATGAAAGGAGATTAGGCAAGCAGCTTGAAGCCTAATAGCTAGGCACGCTCCTTGAAGCTCGAGTTAAATAAACCCATCCTGTGCAGTTGAGGAACTGGAGTGATGgaaaaagcagaagaagaagaagaagaagaagaagaagaaaaaagaaggagaaggaggTGAAGAAGGAAAATAAAGCTAATTTCTCCTGTCCACTGCTGGGCCAGAACCTGTAACACACGCACAAGCATCGAAGAGCCTGCGGTGCAGCCAACACTGATATTGTATTACTAAGCTGAAGGAGCTTTTAACAGGCTGTGATTGTCAGGAGATTGCCAGTAGACAAGCTGACACAAAGGGAATTTGTGCagtgtttgtttgatttaagACTCTTTGCCTGGCTTTAGCTCATGGTTGCAGACACAAGTCATTGATTCTGTTTGAGTTTGAGTGTCCACACTTTTCAGTCtcaggttctctctctctcgctcactcaagcagttcagcagcAGAATCATGctagtgtgtgtatttgtaggagcactgtggtgtgtgtgtgtgtgtgtgagagagagagggctcaTGGGCTGGTGTCTCAGGTGCCCACAGTGTTGACGGGCATCTGGATCTGGACCACTTCTCCGTTCTCACTCTGCTGGATCTGAATAGCCTCCTTTACCTCCATCTCAGCTTGCAGAGCTGGGCCTAGTGCCTCCGCCTGAGGGAGAaaacatagaaagagagaggaaagatgAACGGAAGCTGTGATAATAAAAGACAGGTACAAATGAGAAGAATAgagaattcagtaaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU98475 lncRNA downstream 74994 12048626 ~ 12050542 (-) True LOC111193053
TU98410 lncRNA downstream 390690 11734144 ~ 11734846 (-) True G72974
TU98401 lncRNA downstream 392387 11694678 ~ 11733149 (-) True G72967
TU98284 lncRNA downstream 893858 11231179 ~ 11231678 (-) True G72881
TU98281 lncRNA downstream 899582 11224779 ~ 11225954 (-) True LOC111193093
TU98587 lncRNA upstream 67750 12194573 ~ 12196578 (-) True G73098
TU98588 lncRNA upstream 67750 12194573 ~ 12196578 (-) False G73098
TU98619 lncRNA upstream 376040 12502863 ~ 12539230 (-) True G73119
TU98634 lncRNA upstream 383218 12510041 ~ 12510921 (-) True G73125
TU98621 lncRNA upstream 384689 12511512 ~ 12539230 (-) False G73119
XM_022671913.1 mRNA downstream 74047 12048785 ~ 12051489 (-) False LOC111193053
XM_007228108.3 mRNA downstream 84474 12036675 ~ 12041062 (-) True LOC103035544
XM_015601020.2 mRNA downstream 84497 12036675 ~ 12041039 (-) False LOC103035544
XM_007228105.2 mRNA downstream 89489 12033289 ~ 12036047 (-) True LOC103034366
XM_022672137.1 mRNA downstream 129335 11957570 ~ 11996201 (-) False LOC103031193
XM_022671914.1 mRNA upstream 216652 12343475 ~ 12348986 (-) True LOC111193054
XM_007228120.2 mRNA upstream 318853 12445676 ~ 12456033 (-) False LOC103038241
XM_022672143.1 mRNA upstream 318853 12445676 ~ 12456015 (-) True LOC103038241
XM_007228118.3 mRNA upstream 321613 12448436 ~ 12456034 (-) False LOC103038241
XM_007228117.3 mRNA upstream 321613 12448436 ~ 12456019 (-) False LOC103038241
XR_002650239.1 other downstream 349397 11767509 ~ 11776139 (-) True LOC111193095
TU98300 other downstream 580313 11520887 ~ 11545223 (-) False LOC111193052
TU98292 other downstream 580400 11521012 ~ 11545136 (-) False LOC111193052
TU97707 other downstream 2899977 9222692 ~ 9225559 (-) True G72453
TU97699 other downstream 2951227 9165878 ~ 9174309 (-) True G72449
TU98666 other upstream 437525 12564348 ~ 12564798 (-) False fbxo31
TU98667 other upstream 437525 12564348 ~ 12564966 (-) False fbxo31
TU98668 other upstream 437525 12564348 ~ 12564874 (-) False fbxo31
TU98709 other upstream 484011 12610834 ~ 12621356 (-) True G73172
TU99163 other upstream 2415386 14542209 ~ 14545438 (-) False LOC103025073

Expression Profile