RNA id: TU98551


Basic Information

Item Value
RNA id TU98551
length 2766
lncRNA type inter_gene
GC content 0.35
exon number 3
gene id G73081
representative True

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 12445693 ~ 12448514 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ActttattatacattaaataGGAGTGATGAAAACAAtggccaaaaaaagaaaaagaataataaTAATTCATTATGGGGTCAGAACAGTGGTCATTTACTCACAAATGCACCTTgcacgcacgcacgcacacacacacacacacttctctcacATTCACATCTTCACACtctcccttacacacacacatacatacaccagTCACTAACAGAGTGCATCTCTAAACTCTCATAAAGTGACattcatttaaacaaacaaaaaaaagcacaatttacAAAATATCCATCTTTCAGTATCACAACTGTACAAAGGTTGTTAAAATACGTTTTGCTATTGGCACACCAAAGATGGGGAAGGGGTGAGAGAATGAAAAAAGagcgagatagagagaaagaaaaaacatttccaCATATTCTACTGCTAACCAGAGTGCTATAAGGTTACCTTATTTTAAAAGAAGAGGCAACCAAACAGCTCAAAATACCCAATACCTGCATTAACATTGCATAATAATGTTGATCCTGATTTGTGTTTTCAGTTTGTATGTTAGCCTCCTTGAGATGCAGCATTAGCAATAATtcaaacaaattaaattgaGTAATATATAATGgctgcaaatgaaaaaaaaactatgattaagGACCCATggtacaaaataaagaataaaaaaagaaggcaacattgtttttgtatgattttttttaacatctctTGCGTCAGAAATGTTACTATTTTTTAAGGTAAGTATTGCCATTAAATGTTCACAACAGCCATTCAGTTTTAAATGAACCACAAAAGGCAGTCCTGCAAAACTTATTCTGGAAAGACTTTGAAAAATCAGACCACGCTGCATTCTTTCACTCATTCACCCACGTTTCTGCTTGGCCTCAGAAAACATGCACGTGAtgagaaacacaaacaataaGAATCTGAAGGGCATCAGCACAGCCAGTCTAAATATCAGCCCTTAGACAAGGCATTTGGTTGATCCATTTGTTGACCTCCCCTCCCCTCTGCATATTTGCATCAGTTCATGGATAATATTCagaataatgtttataatggtTAGTTGCCCACTTTGACATCCTAATATCCTTTGCAGAGAAAGAAAACTCCATCTAGAAAATATTTTGGCTGGGTGCAAATGAGTGCATTTTATGTcaacatcttaaaaaaaaaaaaaaaaaaaaaggagaggagaggaaacaTAGGCCTCCACTGGTTTTAAACATTAGAAACTCTACAGTCTAAGATTATGTCCACACATATCTGTGTATTAAAATTCTCACATTTACTTATAAAATTATTTCTGTACATGTAGTGTAGTATGCATGTCACAAACTCTAAATCAAAACAAAGccgtgtgtgtgtaaaaaacagTAGCATACAGGTGTTCAATAATATTTATGAATTTTGACAAACACTAATTGAGATTCGAATTCCATTTTTAGAGACCACAAATTAGGTCAAAAGCAGTTTGAATATGGACAGGAAGCTAAAACagatacatctttttttttttttttttaaatattcagatGTGTGTGGACAGGTCCTTAAACTACTATGCTTCTTCttggaaccaaaagtggttcatCTACAGCATCAGACAAAGAACCTTTTGAAGCATATATCACAAACCTTAGCTCTATGCTGCAGAAACCCATGTTTCAgaccattttttctttactccaACACCACTTCTTTTAGTGTGTCTAGTACTGTTAGTCTCTAAACTCAACATTAAAACCAGAACAATAAACTTGAAAAGACGGTAAATAATAAATGCTGTGAAAGAATGCAATGTAGACATGTTAAAGGGCGCACGGGCTAAAACTACCCCACTTACACAACATTGGCTGTTTAACACAGTATTTTAAAACTCTTTGCTTTTCTCGAGGAGATTACAGAAAAGAACAgcatgcaattgaaaaaaatcaaAGTTTAGAGCTTACAACCGACACACTTTTAAAGGCTGACATGGATCTGTAAATAGACTAGAATGGAAGCCTGCATGCTTGTGTTACACAGTGGTGGagctatattataataaaaaaaaattaaaaaacacccCAAACAGCGTTGGTCCTACTTTAAGACGCTTCAATATGCCTGACACTTTCAAATTTGAAAAGTTGTGCAAACcattaaatacattacaaaaaTTTTCCAAATCACTGCCTTGTTGCCGTTAATATCAGTACAACGATTAAAAGCAATAGTTCAATGCATTCCTTGCACTGCATGCACTTGTTTGCGCTATGGCCCTAAATCATACATCCAAATATTCACTTTTAAAATTAAGAGGCACATATTTGTGTGTTGCCTATTTATGCATATTCTGCTAAATACGATTAATCTGCTGGATTGGAGCAAtttagggaagaaaaaaaaaaacacctaatattcacaaacaacaaaagaaaagcaaaaaaactaataaaaaaataatttcacaacTTGTACAGTCAACAACAATGCAGGACCAACACTTTGGGGCAACTGGCACCAGACAAGAAAAAGCTTATTTGTTTGTAGAGAGCAAATGTATGAAAACCGCGATCCGTTCTGTATGTTGAGGCTAATAATTTAGTGTAATGTACAAAATGCAGTTCTTTCATATTTCAGCTGTTCAGAGTCGATACTGAAATGGAGGCATTATTCACATTAGTATACACTTTGTCTTggacttcttttttttcttcttgcctTCCTTGCTCATCTTCTCCTTGTGCTTTCGAATTTCTCGGACTAATGTGTAAAAGGCG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU98513 lncRNA upstream 248983 12194572 ~ 12196710 (+) True G73045
TU98514 lncRNA upstream 248983 12194572 ~ 12196710 (+) False G73045
TU98497 lncRNA upstream 314895 12130562 ~ 12130798 (+) True G73031
TU98493 lncRNA upstream 318835 12125633 ~ 12126858 (+) True G73029
TU98494 lncRNA upstream 319228 12125633 ~ 12126465 (+) False G73029
TU98553 lncRNA downstream 1972 12450486 ~ 12456004 (+) True G73082
TU98580 lncRNA downstream 109120 12557634 ~ 12557852 (+) True G73091
TU98665 lncRNA downstream 115619 12564133 ~ 12564792 (+) True G73146
TU98662 lncRNA downstream 115832 12564346 ~ 12564792 (+) False G73146
TU98715 lncRNA downstream 190731 12639245 ~ 12641822 (+) True G73177
XM_022672140.1 mRNA upstream 28336 12365365 ~ 12417357 (+) True znf469
XM_015600993.2 mRNA upstream 481909 11955624 ~ 11963784 (+) True LOC103034044
XM_007228102.3 mRNA upstream 503876 11939524 ~ 11941817 (+) True myod1
XM_007228103.3 mRNA upstream 503876 11939524 ~ 11941817 (+) False myod1
XM_022672134.1 mRNA upstream 507313 11925987 ~ 11938380 (+) True LOC103038976
XM_022672142.1 mRNA downstream 10031 12458545 ~ 12485409 (+) False LOC103039191
XM_007228121.3 mRNA downstream 10034 12458548 ~ 12485409 (+) True LOC103039191
XM_022672141.1 mRNA downstream 25060 12473574 ~ 12485409 (+) False LOC103039191
XM_007228122.3 mRNA downstream 25331 12473845 ~ 12485409 (+) False LOC103039191
XM_022672146.1 mRNA downstream 42070 12490584 ~ 12547678 (+) False LOC103039298
TU97933 other upstream 2363553 10078579 ~ 10082140 (+) True G72621
TU97487 other upstream 3296274 9142899 ~ 9149419 (+) True G72281
TU96877 other upstream 5560152 6881587 ~ 6885541 (+) True G71788
TU96736 other upstream 5906899 6525641 ~ 6538794 (+) True G71682
trnaa-agc_15 other upstream 6407945 6037676 ~ 6037748 (+) True trnaa-agc_15
trnar-ucg_4 other downstream 154838 12603352 ~ 12603424 (+) True trnar-ucg_4
XR_002650241.1 other downstream 422970 12871484 ~ 12897931 (+) False LOC103043719
TU99159 other downstream 2200315 14648829 ~ 14649551 (+) True G73533
XR_002650242.1 other downstream 2443020 14891534 ~ 14921003 (+) False rpgrip1l
TU99974 other downstream 3838162 16286676 ~ 16288329 (+) True G74169

Expression Profile