RNA id: TU98580


Basic Information

Item Value
RNA id TU98580
length 219
lncRNA type inter_gene
GC content 0.33
exon number 1
gene id G73091
representative True

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 12557634 ~ 12557852 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TCCATCTGCTTCTGCCAAAATATCATGCTAATGAGCTGAGTGGCAACGAGGACATTGGTATGTGGCACATCAACCaagtgtgtttgagtaaaatgataattgatgttttatactataaactacagaaaacatttctcccaaattccaaataaaaataatgtcatttagagcacttttttgcagaaaatgagaaatggctgaaataacaaaaaagatgca

Function

GO:

id name namespace
GO:0006030 chitin metabolic process biological_process
GO:0006032 chitin catabolic process biological_process
GO:0006040 amino sugar metabolic process biological_process
GO:0042737 drug catabolic process biological_process
GO:0046348 amino sugar catabolic process biological_process
GO:1901071 glucosamine-containing compound metabolic process biological_process
GO:1901072 glucosamine-containing compound catabolic process biological_process
GO:1901136 carbohydrate derivative catabolic process biological_process
GO:0006022 aminoglycan metabolic process biological_process
GO:0006026 aminoglycan catabolic process biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU98553 lncRNA upstream 101630 12450486 ~ 12456004 (+) True G73082
TU98551 lncRNA upstream 109120 12445693 ~ 12448514 (+) True G73081
TU98513 lncRNA upstream 360924 12194572 ~ 12196710 (+) True G73045
TU98514 lncRNA upstream 360924 12194572 ~ 12196710 (+) False G73045
TU98497 lncRNA upstream 426836 12130562 ~ 12130798 (+) True G73031
TU98665 lncRNA downstream 6281 12564133 ~ 12564792 (+) True G73146
TU98662 lncRNA downstream 6494 12564346 ~ 12564792 (+) False G73146
TU98715 lncRNA downstream 81393 12639245 ~ 12641822 (+) True G73177
TU98733 lncRNA downstream 106115 12663967 ~ 12669729 (+) True G73189
TU98736 lncRNA downstream 117134 12674986 ~ 12676348 (+) True G73191
XM_022672146.1 mRNA upstream 9956 12490584 ~ 12547678 (+) False LOC103039298
XM_022672144.1 mRNA upstream 9956 12490585 ~ 12547678 (+) True LOC103039298
XM_022672145.1 mRNA upstream 9956 12490585 ~ 12547678 (+) False LOC103039298
XM_022672149.1 mRNA upstream 9956 12490585 ~ 12547678 (+) False LOC103039298
XM_022672148.1 mRNA upstream 9956 12490586 ~ 12547678 (+) False LOC103039298
XM_015601056.2 mRNA downstream 10985 12568837 ~ 12587543 (+) False fanci
XM_007228299.3 mRNA downstream 10986 12568838 ~ 12587543 (+) True fanci
XM_015601051.2 mRNA downstream 10990 12568842 ~ 12587543 (+) False fanci
XM_022672151.1 mRNA downstream 10991 12568843 ~ 12587543 (+) False fanci
XM_022672155.1 mRNA downstream 122254 12680106 ~ 12715658 (+) False man2a2
TU97933 other upstream 2475494 10078579 ~ 10082140 (+) True G72621
TU97487 other upstream 3408215 9142899 ~ 9149419 (+) True G72281
TU96877 other upstream 5672093 6881587 ~ 6885541 (+) True G71788
TU96736 other upstream 6018840 6525641 ~ 6538794 (+) True G71682
trnaa-agc_15 other upstream 6519886 6037676 ~ 6037748 (+) True trnaa-agc_15
trnar-ucg_4 other downstream 45500 12603352 ~ 12603424 (+) True trnar-ucg_4
XR_002650241.1 other downstream 313632 12871484 ~ 12897931 (+) False LOC103043719
TU99159 other downstream 2090977 14648829 ~ 14649551 (+) True G73533
XR_002650242.1 other downstream 2333682 14891534 ~ 14921003 (+) False rpgrip1l
TU99974 other downstream 3728824 16286676 ~ 16288329 (+) True G74169

Expression Profile