RNA id: TU98665


Basic Information

Item Value
RNA id TU98665
length 660
lncRNA type inter_gene
GC content 0.59
exon number 1
gene id G73146
representative True

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 12564133 ~ 12564792 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

cagtgcctttaGGAAGCATGTATCGATTGGTAGCAAAACTAGACAGAACACCGAACCCCGGAATGGACTCGAATAAGTACACTGTCATATAAGGCAGTCCTGCCAAacatagctaacgctagctagctaatagCTTAACCCCCACACACAGCTGATTTTAGCTGGCTGGTGGGTCTCCGTCAAACACAGGGACGAGCTCCAGTGTTGTTTACCCTCAGTGCATCGTCTCCTCCAGATGGTTTCCGTGCTGAGGATCTGCCTGAATTTCTTGCAGACCAAGGCCAGGTTGGGCAGCACCGTGCCCGGCAAAGAGGAGAAGATCTCCACTAGAAGCTCCGGGGGAAGATCCACCAGAGACTGAGGGCTCCCCGCTACTCTAGCGGCGGCAGCGGCCTCGCTAGGCCCCGCTGTGCGGCTCTGGTGCCAGCCGCCCCTCGCCTCGCCCACGATCCTCTCCCCCTCCTCTTCGTCCATGTCCATTTCGGAGTCGCTGCCGTGCTGGTCGTGCCTCTGCCGCCGCCTGCACCGCCGCGACTGACCCACTCCGCAGAGTCTGGCACACACCGCCATCCGTAGTCACCAAACAGGCAACATTACATCAGTGGAACAGCTGCCGTGTCCGTCCCTCCGCTCTCGCTttcgctctcgctctcgctctct

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU98580 lncRNA upstream 6281 12557634 ~ 12557852 (+) True G73091
TU98553 lncRNA upstream 108129 12450486 ~ 12456004 (+) True G73082
TU98551 lncRNA upstream 115619 12445693 ~ 12448514 (+) True G73081
TU98513 lncRNA upstream 367423 12194572 ~ 12196710 (+) True G73045
TU98514 lncRNA upstream 367423 12194572 ~ 12196710 (+) False G73045
TU98715 lncRNA downstream 74453 12639245 ~ 12641822 (+) True G73177
TU98733 lncRNA downstream 99175 12663967 ~ 12669729 (+) True G73189
TU98736 lncRNA downstream 110194 12674986 ~ 12676348 (+) True G73191
TU98768 lncRNA downstream 382854 12947646 ~ 12952320 (+) False G73214
TU98771 lncRNA downstream 382854 12947646 ~ 12952320 (+) True G73214
XM_022672144.1 mRNA upstream 16455 12490585 ~ 12547678 (+) True LOC103039298
XM_015601056.2 mRNA downstream 4045 12568837 ~ 12587543 (+) False fanci
XM_007228299.3 mRNA downstream 4046 12568838 ~ 12587543 (+) True fanci
XM_015601051.2 mRNA downstream 4050 12568842 ~ 12587543 (+) False fanci
XM_022672151.1 mRNA downstream 4051 12568843 ~ 12587543 (+) False fanci
XM_022672155.1 mRNA downstream 115314 12680106 ~ 12715658 (+) False man2a2
TU97933 other upstream 2481993 10078579 ~ 10082140 (+) True G72621
TU97487 other upstream 3414714 9142899 ~ 9149419 (+) True G72281
TU96877 other upstream 5678592 6881587 ~ 6885541 (+) True G71788
TU96736 other upstream 6025339 6525641 ~ 6538794 (+) True G71682
trnaa-agc_15 other upstream 6526385 6037676 ~ 6037748 (+) True trnaa-agc_15
trnar-ucg_4 other downstream 38560 12603352 ~ 12603424 (+) True trnar-ucg_4
XR_002650241.1 other downstream 306692 12871484 ~ 12897931 (+) False LOC103043719
TU99159 other downstream 2084037 14648829 ~ 14649551 (+) True G73533
XR_002650242.1 other downstream 2326742 14891534 ~ 14921003 (+) False rpgrip1l
TU99974 other downstream 3721884 16286676 ~ 16288329 (+) True G74169

Expression Profile