RNA id: TU98715


Basic Information

Item Value
RNA id TU98715
length 838
lncRNA type inter_gene
GC content 0.40
exon number 4
gene id G73177
representative True

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 12639245 ~ 12641822 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ATTTTTGGATTGTTGGGTTAAAAATGATGTACACAGCAAATTTGtcagtgttaaaataaaactagaATTTTATGAGTCACGTGTTAATTTTACTCTGACAGTGTTGAATGAGCACTGGCAGATTTGTTGTGTAGAAGTAAAACGGCAAAACCCACCTTCTATTTGATCATATTAAATGTTGCTTAAAAACTCTGATACTGTAAAACGTCACTGTCTGTCAggtgttacttaaaaaatgctatttttggagaattaataaataactgaaacaAATTATGTGTtcaatttctatttattttcatgtgttttatgtATAGTCTctgatatttataaaaatatagtgATACAGTAAATGGGTCCCCTAATTCTTTCAGTCCACAGATGCTGGTGACGGGGTTACTGGTGTGAGGGATACAGTAGAGGAGATcttgctgtgctgctgctgctgctgctgctgctgctagtagAGGAGAAGGTGCAGACTCAGGGTTGTAGAGAGGAGGCTGGAATCACATCCCGGTTGCAGGATTATTGCTGACCCACAGTGAAGCGAGTTTCAGTTACTTCTACATGATTATTGGCCACTGTGTGATTGTTGTAGTGTAAATCCGCTTCAACAGGCTCTTCTTCATCAGGCACCTCCCAGTAGATGACATCATCAAAGCATTTATCATCTGTTGGATCTCCCCAGAGGGGCATCCTCAAGATTAGACCCACAAATATTCCACCTCCTATTCCAAaacatatagacacacacattGCAGCTGCCTGGAATCCGCCTTGGGCAGCAGGAGTCCTGTTCTTGAAATCACCAGTAAAATCAAATGTATCTTTCAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU98665 lncRNA upstream 74453 12564133 ~ 12564792 (+) True G73146
TU98662 lncRNA upstream 74453 12564346 ~ 12564792 (+) False G73146
TU98580 lncRNA upstream 81393 12557634 ~ 12557852 (+) True G73091
TU98553 lncRNA upstream 183241 12450486 ~ 12456004 (+) True G73082
TU98551 lncRNA upstream 190731 12445693 ~ 12448514 (+) True G73081
TU98733 lncRNA downstream 22145 12663967 ~ 12669729 (+) True G73189
TU98736 lncRNA downstream 33164 12674986 ~ 12676348 (+) True G73191
TU98768 lncRNA downstream 305824 12947646 ~ 12952320 (+) False G73214
TU98771 lncRNA downstream 305824 12947646 ~ 12952320 (+) True G73214
TU98772 lncRNA downstream 305824 12947646 ~ 12952320 (+) False G73214
XM_015601056.2 mRNA upstream 51702 12568837 ~ 12587543 (+) False fanci
XM_007228299.3 mRNA upstream 51702 12568838 ~ 12587543 (+) True fanci
XM_015601051.2 mRNA upstream 51702 12568842 ~ 12587543 (+) False fanci
XM_022672151.1 mRNA upstream 51702 12568843 ~ 12587543 (+) False fanci
XM_022672144.1 mRNA upstream 91567 12490585 ~ 12547678 (+) True LOC103039298
XM_022672155.1 mRNA downstream 38284 12680106 ~ 12715658 (+) False man2a2
XM_007228132.3 mRNA downstream 38288 12680110 ~ 12715658 (+) True man2a2
XM_022672154.1 mRNA downstream 38289 12680111 ~ 12715658 (+) False man2a2
XM_007228135.3 mRNA downstream 38289 12680111 ~ 12715658 (+) False man2a2
XM_022672156.1 mRNA downstream 38297 12680119 ~ 12715658 (+) False man2a2
trnar-ucg_4 other upstream 35821 12603352 ~ 12603424 (+) True trnar-ucg_4
TU97933 other upstream 2557105 10078579 ~ 10082140 (+) True G72621
TU97487 other upstream 3489826 9142899 ~ 9149419 (+) True G72281
TU96877 other upstream 5753704 6881587 ~ 6885541 (+) True G71788
TU96736 other upstream 6100451 6525641 ~ 6538794 (+) True G71682
XR_002650241.1 other downstream 229662 12871484 ~ 12897931 (+) False LOC103043719
TU99159 other downstream 2007007 14648829 ~ 14649551 (+) True G73533
XR_002650242.1 other downstream 2249712 14891534 ~ 14921003 (+) False rpgrip1l
TU99974 other downstream 3644854 16286676 ~ 16288329 (+) True G74169
TU100573 other downstream 5813029 18454851 ~ 18455197 (+) True G74649

Expression Profile