RNA id: TU98733


Basic Information

Item Value
RNA id TU98733
length 1496
lncRNA type inter_gene
GC content 0.49
exon number 10
gene id G73189
representative True

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 12663967 ~ 12669729 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TAAAGTATGAACATGACTTCAATACCGGAAAGGCCCTTAATCAGCTACTACAAATGGTTTGATCCATAATAAGCATACTGTATCACACCAAAGGCTAAACTgagtaaaaaacaacaaaataactcACCACGTCGGGGATCCGAGCACACACCTCTGGCATTTCTCCAGTCAGCACTGCCAGAGTTCCTGCTGCAGCCTTCCTTAGCCTCTCATCATCCTCACCACAATATAACACCAAGAGTTTCAATCGGTCACTGTCTGTTGCCAGGTAAAGCTTCTGTACCTCAGGGCTTAAGACCAAGTTACACATGCACTCGGTAGCTGCTGCTCGCACAAGGTCATGCTCCTCAAACATGTAGCCCTCTATTTTAGGCACCGCTTTCTCCTTAATGATCTTCTGTCTAAGTCTATCACTAATGCCAGCCAGGTTAGTGAGAGCCATCAGAGCCTCAAAGTTCTGCAGGAGAGAACATTCCAGAGCCAAGAGACTGACCAGGGGACGCACCACCTCAtaaactctctctccaggAAAGGCAATCTCAGGGTTGGAGGTGATTGTGATCTTGGCCAGTGCTTGTGCTGCTTTGATCTTGCCCACATCTGTGCTGTCTGACACCAGAGGTAACAAGGCTTTTCCTCCTCCTTGTGCCACTACTGTTCCTCTGTCCTCCTGCCGCTCTACCAGAGCCAGGAACACTCTGGCAATGCATTCTCTGCATGTCTCAGTGAGTGCAGGGCTTTCTTGTTTGACCATACACACCAGTGCTGACACCACCCCGGCCTCCAACAGCTTGACCAGCCGCTTCTCCACAAAAGATTTTGCATCCTTTGGATGCTCTTCAGGTACATGCTGTTTGGCATATTTGGCCAGTTCCACCAGCTGCGGATCCGGCTTCTCCACTTCATAACTGTTGGTACAGTTTACCAAAGTAGATCCAATGGCAAACAATACAGTCTTATCCTCAGacttAGCCAGCTGAAACATGGCCTGAAGAGCATTCTTATCACCCACCAAGTCCTCCTTCACATCAGCATCAAAGGTGAGGTAGGCTAGACCTTCAATAGCCCAGCGGCGGGAGGTCTGAGGAAGAGAATCATTACACAGCCACTTCCTGCACTGTTTGGCGAGTTTGAGCGTTGACCCTTCTGCAAACTGCTTCATGCTGAAATCTGTGCCTCCTGCTGATCCAAGTTTACACAGTCCCACAAGAGCTCGCACTCTTATCTGCTCATTTTCACTCTTCTTATAAAGGTCCTTCAGCAGTGCCACTCCATTGGCTGTGATAAAGGAGGCTCTCTTTGCCTTGCCTGCAGCATGGATTAGTGTCTCTACTGCCACCTGTTGGTGGGTGATATTCTCAGAGGCGCACAGAGAAATGACAGCTTCCATGATGCCAGACATCTCCAGAGTGCGGTTGCCAACATCACTAGGGCCCTGCAGAAGGACCGAAACAGTCTGTATTGCACGCAGTTTATTCTCCAATCCTGAGCCTTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU98715 lncRNA upstream 22145 12639245 ~ 12641822 (+) True G73177
TU98665 lncRNA upstream 99175 12564133 ~ 12564792 (+) True G73146
TU98662 lncRNA upstream 99175 12564346 ~ 12564792 (+) False G73146
TU98580 lncRNA upstream 106115 12557634 ~ 12557852 (+) True G73091
TU98553 lncRNA upstream 207963 12450486 ~ 12456004 (+) True G73082
TU98736 lncRNA downstream 5257 12674986 ~ 12676348 (+) True G73191
TU98768 lncRNA downstream 277917 12947646 ~ 12952320 (+) False G73214
TU98771 lncRNA downstream 277917 12947646 ~ 12952320 (+) True G73214
TU98772 lncRNA downstream 277917 12947646 ~ 12952320 (+) False G73214
TU98857 lncRNA downstream 428012 13097741 ~ 13098590 (+) True G73288
XM_015601056.2 mRNA upstream 76424 12568837 ~ 12587543 (+) False fanci
XM_007228299.3 mRNA upstream 76424 12568838 ~ 12587543 (+) True fanci
XM_015601051.2 mRNA upstream 76424 12568842 ~ 12587543 (+) False fanci
XM_022672151.1 mRNA upstream 76424 12568843 ~ 12587543 (+) False fanci
XM_022672147.1 mRNA upstream 116289 12509675 ~ 12547678 (+) False LOC103039298
XM_022672155.1 mRNA downstream 10377 12680106 ~ 12715658 (+) False man2a2
XM_007228132.3 mRNA downstream 10381 12680110 ~ 12715658 (+) True man2a2
XM_022672154.1 mRNA downstream 10382 12680111 ~ 12715658 (+) False man2a2
XM_007228135.3 mRNA downstream 10382 12680111 ~ 12715658 (+) False man2a2
XM_022672156.1 mRNA downstream 10390 12680119 ~ 12715658 (+) False man2a2
trnar-ucg_4 other upstream 60543 12603352 ~ 12603424 (+) True trnar-ucg_4
TU97933 other upstream 2581827 10078579 ~ 10082140 (+) True G72621
TU97487 other upstream 3514548 9142899 ~ 9149419 (+) True G72281
TU96877 other upstream 5778426 6881587 ~ 6885541 (+) True G71788
TU96736 other upstream 6125173 6525641 ~ 6538794 (+) True G71682
XR_002650241.1 other downstream 201755 12871484 ~ 12897931 (+) False LOC103043719
TU99159 other downstream 1979100 14648829 ~ 14649551 (+) True G73533
XR_002650242.1 other downstream 2221805 14891534 ~ 14921003 (+) False rpgrip1l
TU99974 other downstream 3616947 16286676 ~ 16288329 (+) True G74169
TU100573 other downstream 5785122 18454851 ~ 18455197 (+) True G74649

Expression Profile