RNA id: TU98736


Basic Information

Item Value
RNA id TU98736
length 1363
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G73191
representative True

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 12674986 ~ 12676348 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

gtcaattctgtcgtatatttacattttctcctgcgcttttttttttactgagagctcttcttaagatggtgtccttttttgtaaaagaatgtaactttaagtttcatagagatttttataaacatcaggacatgtggtcttactgtgaactacaaatgaacagaagtcacgttacagcagtgtttatcaatcctgttcttacatattctactgcatattaacactgttctgcatattttagagcttcctctgctttaaaggcatttaataaagttagtggtggtatgatgtgtctaatacactgctggatatacataatgattaatttaggctccatagggggctaaatttgcacactgtcttgttatttattattctttgtctgtattgtgttgtattgtctgtctgcacttttgtactgttgcactattgttctgtctacactgtgtttatgtgcaccatggtccctggaggaacgttgtttcgtttcactgtgtactctgtatatagctgaaatgacaataaaaaccactttgactttgactttaaaggattttaacaggtaaactcagtaaattactgtttattagctgatcagctggatcaggtggaaaatttttggggcagtgatcggggttaagaaactgctttaaactacaaacataaagaactgtactaaattctgactatccactacatctggcttctagttaactagttaactaaatgaatattcgttcattatagctcacagtaagtcctgtaatcctaaattaattgaaaatgaaacagtgattagctgatcaggtacagggcaagttgaacattacatatatagttttttttttctttaaccttgactcccaatctagctcattccaaagttaagctaactcactaacacagctgcagtttattaatcacagtgggtttaatctgtgggCTAATTCAGatacgtgtatttttaaccagctagcagaaacatatcatcacagttgacgTGGTTaacctatcgttacctttcttttagaaaaatctccgtatatccagatctgctttaaaatcagctgaagctgctgcaccccgatcccgctgctaaatctcacagcgagggggcggggcttccaaacagcaaactgcctctcctTCGCGCggcgcaaaaccagcaagctgattggctgtttctactgagaggcgggacttaatacctgaaccggcttcgtgattggtccggtctgtcttctcattaatagtacacctgatctgagcgaaaagatgtcatttttgggggggacaaatccacctgtttctaatattgggtgggacatgtcccacccatcccccccggttcctacgcctatgt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU98733 lncRNA upstream 5257 12663967 ~ 12669729 (+) True G73189
TU98715 lncRNA upstream 33164 12639245 ~ 12641822 (+) True G73177
TU98665 lncRNA upstream 110194 12564133 ~ 12564792 (+) True G73146
TU98662 lncRNA upstream 110194 12564346 ~ 12564792 (+) False G73146
TU98580 lncRNA upstream 117134 12557634 ~ 12557852 (+) True G73091
TU98768 lncRNA downstream 271298 12947646 ~ 12952320 (+) False G73214
TU98771 lncRNA downstream 271298 12947646 ~ 12952320 (+) True G73214
TU98772 lncRNA downstream 271298 12947646 ~ 12952320 (+) False G73214
TU98857 lncRNA downstream 421393 13097741 ~ 13098590 (+) True G73288
TU98861 lncRNA downstream 481421 13157769 ~ 13158679 (+) True G73292
XM_015601056.2 mRNA upstream 87443 12568837 ~ 12587543 (+) False fanci
XM_007228299.3 mRNA upstream 87443 12568838 ~ 12587543 (+) True fanci
XM_015601051.2 mRNA upstream 87443 12568842 ~ 12587543 (+) False fanci
XM_022672151.1 mRNA upstream 87443 12568843 ~ 12587543 (+) False fanci
XM_022672147.1 mRNA upstream 127308 12509675 ~ 12547678 (+) False LOC103039298
XM_022672155.1 mRNA downstream 3758 12680106 ~ 12715658 (+) False man2a2
XM_007228132.3 mRNA downstream 3762 12680110 ~ 12715658 (+) True man2a2
XM_022672154.1 mRNA downstream 3763 12680111 ~ 12715658 (+) False man2a2
XM_007228135.3 mRNA downstream 3763 12680111 ~ 12715658 (+) False man2a2
XM_022672156.1 mRNA downstream 3771 12680119 ~ 12715658 (+) False man2a2
trnar-ucg_4 other upstream 71562 12603352 ~ 12603424 (+) True trnar-ucg_4
TU97933 other upstream 2592846 10078579 ~ 10082140 (+) True G72621
TU97487 other upstream 3525567 9142899 ~ 9149419 (+) True G72281
TU96877 other upstream 5789445 6881587 ~ 6885541 (+) True G71788
TU96736 other upstream 6136192 6525641 ~ 6538794 (+) True G71682
XR_002650241.1 other downstream 195136 12871484 ~ 12897931 (+) False LOC103043719
TU99159 other downstream 1972481 14648829 ~ 14649551 (+) True G73533
XR_002650242.1 other downstream 2215186 14891534 ~ 14921003 (+) False rpgrip1l
TU99974 other downstream 3610328 16286676 ~ 16288329 (+) True G74169
TU100573 other downstream 5778503 18454851 ~ 18455197 (+) True G74649

Expression Profile