RNA id: TU98850


Basic Information

Item Value
RNA id TU98850
length 2441
lncRNA type inter_gene
GC content 0.47
exon number 2
gene id G73281
representative True

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 12989186 ~ 13088436 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TGTCTCCGCGCGGTCAGGTGCGCTCCTGACTGTTGAGGGGTCATCCTCATTGACCAATCAGTGGCAGTCTGATGGGATGTCAGTGGACAATTATATGTTTACCTATTTCTGAGAGAATCGTTATATAAGAagatagaaaaaagagaaaagaagaagaagcccAACAACTCGGGACAACACACGCGCGCACCAACACATCAGAGACTGTTGTCGGACTGATCGCGCGAGCCTTCGCGTTCCCTGAGAGTCCGTGACGGTGGGAGGGGGGTGGAGGCGGGTTCTTGCGAGGAGTCACGTTGCGCAGAGTAGAgatcctcatcctcatcataCGTCTGAGCGGCGGGAGGGAGGCGAGCAAGTGGACACGTTCGGGTTCGGTCGGGGCGCCAGTCCAGTTCTGCAAACgtccagagattttttttatcccacGCAATTTCTCGTCAATCGTCACAAAATAATTTTCACAATtattttgtgagtgtgtgtgttctactATTATACTGGGATCGTTTTAAAACCtgtagcttttatttttttttttatttttttttttgcatctctgGATAGCGTTCTCCGACATCGCTTCATCCCTCCTCCCGCACAGCACATGGTGGTGGAATGAAGAAGAAGCTGATCAGagctgcatcatcatcatcatcatcatgagtGCGTGGATGCTCGAGGCAGATCCAGCTGTGGGCCAGCGGTGGACGCGCTGCGCCAGAGCGCGCTGGACGGTGCTGATCCTCTAAGGGCaaagcagcatcagcagcatcagcatcagcagagTCAGTCGTCCGACATGAGCGGCGGAACGCTCCCTGATGGATGTAACGTTACGTCTCACCTCCACACCAGCAGCACACGAGTTCACATCCACATCCATTTCTGACGGAACTATACAGCTACAGCATGACTTTTTCCCTCCTGTTGTGCTCTCTTACCGCTGGATAAGAAGCCGAAAAGAGGACGACGTGTGAGTGCATCTGAGCTGTTTTGGCAAAGGGAACCTCGGGGATGAATGTGGTGggatgattttgtgttttttttttttttctacggGATGCTCGGATCTTGCTTCGTCTGATTCCCTTCGGTTACTTGGAATTTGCACGGAAAGCTTTCATTAAGTGATTGATTTGTTCaagggaacaaaaaaaaacacatgcatatTTTTCCtttccatcatcatcatcgacGTTCTTGAAGCGCACACGAACCCGACCAGGCATTCCTAAGGACATCACGATGacatttaaatctgaaaatctggaaatctaagcgtgTTGAGATGATCCGCACTGGGCTGTGAGTAGAAACCTAATCAGATCCTGCGCGTATATAGGGGGCGAAGaggaaagaaagcaagaaaaaaaagaaagagaaagaaagaagggggaagggagaaaaagaaaagaaagtaagTTGAGTTGCAACCTATAAACCCTGAGGAAGGAATAAGAAAACCCAAAAACCCTCAGTGCTACTGTGCTATCCGCTTTTTGGTGGTTCCAgtgaatatatacaaaaaaatataaatatatatatgcccCATGGAGATACGGCAGTGAGAAAGAAGGAAGCATATGCTAAAGGAGATTGAGGAGACTGCCTActgtgtttgaaaaaaaaaaaaatatatatatatacatatcatatatatatataaaaatataatctataGTCTATAATCGATTTAGGCTCAAGCAAGAATGGGACACCAAAGCAGAGGGGGGAGCGCATTCATTTGACTCCATGCCATGCAGGAAAAGAATGTGCTTCGGATGGTAAATATGGCCAGAGTGATGTCCGTGTCCGTTTGACACGACAGGAGACCGCACCGCAGCGTCGGCGTCTACCTACATCTATCTGGGGGTATCTCTATTTGGGTTTATGGAGAGAGTAATATTTGAGAGTTTGAGATTGAACACAATGATGGATACAAGCAACTAAACGAGCCGAGCCGATTCGAGCTGTGCCTGAGCCGGGCTGGAGGATCTATGTAGCTTTTGCTGGCCATCGCCAGACTCAAGGCAGGAGCAAGACCAGAAGAAATTTGTTAACGACGTACGTACACGTCGAGGGGGAACTGTGCGCGAAGAAGTTCGTGCAGAAGAGCGTGCAGAATTGCGCAAGGTTCGCCGGTTCGCGGATGGAGTTGCGCTGCGGTAGGCGGCGTGGAGGTGCGCGGCGCTCTCGGGCTTTCGCTCCGGTTTGAACTATACTGCGCCGATTATTCAAGCTTCTGGAAAGGACGATAAAGAGAGTCACTGAGTGAAACTAAGTGTGAAGATGTCCAGAAACTGCTGGCACTGTGGATGATTTGGCAGGTGAGTGAGATTAGGAGGTATGGTGAGGATCACCTATTATACATAAAGATTATAACGGTTGGGTGAATTTTAGgtgaacattatttttttgtatactgagcttttgcactt

Function

GO:

id name namespace
GO:0016020 membrane cellular_component

KEGG:

id description
ko04514 Cell adhesion molecules

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU98799 lncRNA downstream 127558 12861113 ~ 12861628 (-) True G73238
TU98713 lncRNA downstream 364768 12621682 ~ 12624418 (-) True G73176
TU98710 lncRNA downstream 368673 12613606 ~ 12620513 (-) True G73173
TU98694 lncRNA downstream 406732 12578858 ~ 12582454 (-) True G73162
TU98688 lncRNA downstream 414602 12573311 ~ 12574584 (-) True G73159
TU98871 lncRNA upstream 149517 13237953 ~ 13238314 (-) True G73302
TU98894 lncRNA upstream 328221 13416657 ~ 13417462 (-) False G73322
TU98895 lncRNA upstream 328221 13416657 ~ 13417462 (-) True G73322
TU98957 lncRNA upstream 740282 13828718 ~ 13830757 (-) True G73371
TU99027 lncRNA upstream 918316 14006752 ~ 14007149 (-) True G73429
XM_007228148.3 mRNA downstream 39747 12944453 ~ 12949439 (-) True rag2
XM_007228136.3 mRNA downstream 117804 12722277 ~ 12871382 (-) True LOC103043208
XM_022672158.1 mRNA downstream 223371 12722277 ~ 12765815 (-) False LOC103043208
XM_007228127.3 mRNA downstream 314664 12662741 ~ 12674522 (-) True unc45a
XM_007228300.3 mRNA downstream 327379 12658893 ~ 12661807 (-) True gdpgp1
XM_022671890.1 mRNA upstream 745117 13833553 ~ 13848142 (-) True LOC103022766
XM_007228155.3 mRNA upstream 773114 13861550 ~ 13909603 (-) True slc1a2
XM_007228154.3 mRNA upstream 773114 13861550 ~ 13883565 (-) False slc1a2
XM_007228156.3 mRNA upstream 773114 13861550 ~ 13883555 (-) False slc1a2
XM_022672165.1 mRNA upstream 831737 13920173 ~ 13964026 (-) False pamr1
TU98709 other downstream 367830 12610834 ~ 12621356 (-) True G73172
TU98667 other downstream 424220 12564348 ~ 12564966 (-) False fbxo31
TU98668 other downstream 424312 12564348 ~ 12564874 (-) False fbxo31
TU98666 other downstream 424388 12564348 ~ 12564798 (-) False fbxo31
XR_002650239.1 other downstream 1213047 11767509 ~ 11776139 (-) True LOC111193095
TU99163 other upstream 1453773 14542209 ~ 14545438 (-) False LOC103025073
XR_002650248.1 other upstream 2673328 15761764 ~ 15778423 (-) False LOC103046265
TU100463 other upstream 4788590 17877026 ~ 17883786 (-) False nrg4
TU100498 other upstream 4894311 17982747 ~ 18029747 (-) True G74591
TU100745 other upstream 5850738 18939174 ~ 18940464 (-) True G74791

Expression Profile