RNA id: TU98861


Basic Information

Item Value
RNA id TU98861
length 911
lncRNA type inter_gene
GC content 0.72
exon number 1
gene id G73292
representative True

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 13157769 ~ 13158679 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ACCGcactctccagcccggccgacttccagcactccagcgcggccggcttccagctctccagcgcggccgacttccagcactccagcgcggccggcttccagctctccagcgcggccgacttccagcactccagcgcggccggcttccagctctccagcgcggccgacttccagcactctaGCCCGACCGGCTTCCAGCTCACCAGCCCGGCTGGCTTCCAGATCTTCGACTCCGGCTCCGgaagcaagctccggtccggtGTTGACAACCACGCCCACTGCTGAATCTGCAGCTCCTGTCCGGATCTTggcggcagccgcactctcaGCTCCCGCTGAAGCGGCTTCTTCGCCAGCGGTGCCAGCCGCCTCCAAGCCCGCGGTGGCAGCCGCCTCCACGTCAGCGGTGCCTGCCGCGCCCACgccagcaggacccaccgcctttgcttcagcgctgcccgcggctccggccgcctctgcttcagcgctgcccgcggctccggccgcctctgactctgtgcccgcggctccggccgcctctgacccagttcccgcggccccggccgtctctgacccagttcccgcggccccggccgtctctgacccagttcccgcggccccggccgtctctgacccagttcccgcggccccagccgcctctgacccagttcccgcggctccggccgcctctgactctgtgcccgctgtTACCCCAGTTCTTGTGCCTGGGGGTCCAGCCTCTGCTCCTGTGCCTACTCCCAGGTCACGAGCTCCtagacccgccgcgcctgctcaagctgcacccgccgcgcctgctcaagctgcacccgccgcgcctgctcaagctgcacccgccgcgcctgctcaagctgcacccgccgcgcctgctcaagctgcacccgccgcgcctg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU98857 lncRNA upstream 59179 13097741 ~ 13098590 (+) True G73288
TU98768 lncRNA upstream 205449 12947646 ~ 12952320 (+) False G73214
TU98771 lncRNA upstream 205449 12947646 ~ 12952320 (+) True G73214
TU98772 lncRNA upstream 205449 12947646 ~ 12952320 (+) False G73214
TU98736 lncRNA upstream 481421 12674986 ~ 12676348 (+) True G73191
TU98867 lncRNA downstream 66992 13225671 ~ 13225955 (+) True G73298
TU98870 lncRNA downstream 79281 13237960 ~ 13238212 (+) True G73301
TU98905 lncRNA downstream 351077 13509756 ~ 13510238 (+) True G73332
TU98910 lncRNA downstream 478337 13637016 ~ 13637702 (+) True G73337
TU98939 lncRNA downstream 609446 13768125 ~ 13768360 (+) True G73354
XM_022672161.1 mRNA upstream 214807 12934452 ~ 12942962 (+) True rag1
XM_007228140.3 mRNA upstream 248708 12897785 ~ 12909061 (+) False LOC103044030
XM_022672160.1 mRNA upstream 248708 12900385 ~ 12909061 (+) False LOC103044030
XM_007228139.3 mRNA upstream 248708 12901430 ~ 12909061 (+) True LOC103044030
XM_007228138.3 mRNA upstream 261306 12871484 ~ 12896463 (+) True LOC103043719
XM_007228150.3 mRNA downstream 504130 13662809 ~ 13676841 (+) False ehf
XM_022672162.1 mRNA downstream 510943 13669622 ~ 13677076 (+) True ehf
XM_022672163.1 mRNA downstream 510943 13669622 ~ 13676841 (+) False ehf
XM_007228153.3 mRNA downstream 535749 13694428 ~ 13765050 (+) True pdhx
XM_022671916.1 mRNA downstream 635734 13794413 ~ 13828422 (+) True cd44
XR_002650241.1 other upstream 259838 12871484 ~ 12897931 (+) False LOC103043719
trnar-ucg_4 other upstream 554345 12603352 ~ 12603424 (+) True trnar-ucg_4
TU97933 other upstream 3075629 10078579 ~ 10082140 (+) True G72621
TU97487 other upstream 4008350 9142899 ~ 9149419 (+) True G72281
TU96877 other upstream 6272228 6881587 ~ 6885541 (+) True G71788
TU99159 other downstream 1490150 14648829 ~ 14649551 (+) True G73533
XR_002650242.1 other downstream 1732855 14891534 ~ 14921003 (+) False rpgrip1l
TU99974 other downstream 3127997 16286676 ~ 16288329 (+) True G74169
TU100573 other downstream 5296172 18454851 ~ 18455197 (+) True G74649
TU100801 other downstream 5924137 19082816 ~ 19085556 (+) True G74832

Expression Profile