RNA id: TU98905


Basic Information

Item Value
RNA id TU98905
length 483
lncRNA type inter_gene
GC content 0.44
exon number 1
gene id G73332
representative True

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 13509756 ~ 13510238 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

tacccagaacgcaccactccatgacacaacacacactcccgatcacatgacacatcacatgacgccaccaggaagccccgagtactgattatccACAGTATTTTAGGACCATGCTCAtgctcacacctcgccgagtatctgtttggtaatacctacaatacaaagcgtttctcttgcccttgctatcttccgtgtatgatcttgtttttgttttctaccgactttgatttttgcctgctcccttgtgttggatattcgtgtatgacctggactgtttatagtgctttggatttttgcctaccctgttaTACTGCCtacccgtgtatgaactctggactgtcttccgtttatggtatggtttttctacactgtgtgtttttggtactgaccctgtttccgttgactacccctgtctgctctataactttaaataaagttattttattgtatctgcaccagtctcattcctgtctggccctgaca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU98870 lncRNA upstream 271544 13237960 ~ 13238212 (+) True G73301
TU98867 lncRNA upstream 283801 13225671 ~ 13225955 (+) True G73298
TU98861 lncRNA upstream 351077 13157769 ~ 13158679 (+) True G73292
TU98857 lncRNA upstream 411166 13097741 ~ 13098590 (+) True G73288
TU98771 lncRNA upstream 557436 12947646 ~ 12952320 (+) True G73214
TU98910 lncRNA downstream 126778 13637016 ~ 13637702 (+) True G73337
TU98939 lncRNA downstream 257887 13768125 ~ 13768360 (+) True G73354
TU98947 lncRNA downstream 281092 13791330 ~ 13794158 (+) True G73361
TU98944 lncRNA downstream 318481 13828719 ~ 13830765 (+) True G73359
TU98991 lncRNA downstream 412363 13922601 ~ 13923296 (+) True G73404
XM_022672161.1 mRNA upstream 566794 12934452 ~ 12942962 (+) True rag1
XM_007228140.3 mRNA upstream 600695 12897785 ~ 12909061 (+) False LOC103044030
XM_022672160.1 mRNA upstream 600695 12900385 ~ 12909061 (+) False LOC103044030
XM_007228139.3 mRNA upstream 600695 12901430 ~ 12909061 (+) True LOC103044030
XM_007228138.3 mRNA upstream 613293 12871484 ~ 12896463 (+) True LOC103043719
XM_007228150.3 mRNA downstream 152571 13662809 ~ 13676841 (+) False ehf
XM_022672162.1 mRNA downstream 159384 13669622 ~ 13677076 (+) True ehf
XM_022672163.1 mRNA downstream 159384 13669622 ~ 13676841 (+) False ehf
XM_007228153.3 mRNA downstream 184190 13694428 ~ 13765050 (+) True pdhx
XM_022671916.1 mRNA downstream 284175 13794413 ~ 13828422 (+) True cd44
XR_002650241.1 other upstream 611825 12871484 ~ 12897931 (+) False LOC103043719
trnar-ucg_4 other upstream 906332 12603352 ~ 12603424 (+) True trnar-ucg_4
TU97933 other upstream 3427616 10078579 ~ 10082140 (+) True G72621
TU97487 other upstream 4360337 9142899 ~ 9149419 (+) True G72281
TU96877 other upstream 6624215 6881587 ~ 6885541 (+) True G71788
TU99159 other downstream 1138591 14648829 ~ 14649551 (+) True G73533
XR_002650242.1 other downstream 1381296 14891534 ~ 14921003 (+) False rpgrip1l
TU99974 other downstream 2776438 16286676 ~ 16288329 (+) True G74169
TU100573 other downstream 4944613 18454851 ~ 18455197 (+) True G74649
TU100801 other downstream 5572578 19082816 ~ 19085556 (+) True G74832

Expression Profile