RNA id: TU98939


Basic Information

Item Value
RNA id TU98939
length 236
lncRNA type inter_gene
GC content 0.48
exon number 1
gene id G73354
representative True

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 13768125 ~ 13768360 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GAAAAGAAGGGGGGGGGGAGTGAGAGTAGGGGGGTTGAGGGACGCACAAATCCCTTCTCTGACAATAGAACCGGAGTTATAAGCACACTTCCACAATGGCCAGCCTTGATGAGTTTGTCACTGGTGTTGTTGCAGCATGTCATTCATATTCACACATATTCTCAGCCCTCACCCATTTCCCCTTTACAGCGGCACCACGCCCTGCCACATCTCacgaaaaaaaagaagaaaaaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU98910 lncRNA upstream 130423 13637016 ~ 13637702 (+) True G73337
TU98905 lncRNA upstream 257887 13509756 ~ 13510238 (+) True G73332
TU98870 lncRNA upstream 529913 13237960 ~ 13238212 (+) True G73301
TU98867 lncRNA upstream 542170 13225671 ~ 13225955 (+) True G73298
TU98861 lncRNA upstream 609446 13157769 ~ 13158679 (+) True G73292
TU98947 lncRNA downstream 22970 13791330 ~ 13794158 (+) True G73361
TU98944 lncRNA downstream 60359 13828719 ~ 13830765 (+) True G73359
TU98991 lncRNA downstream 154241 13922601 ~ 13923296 (+) True G73404
TU99013 lncRNA downstream 234712 14003072 ~ 14003426 (+) True G73416
TU99014 lncRNA downstream 236293 14004653 ~ 14005224 (+) True G73417
XM_007228153.3 mRNA upstream 3075 13694428 ~ 13765050 (+) True pdhx
XM_022672162.1 mRNA upstream 91049 13669622 ~ 13677076 (+) True ehf
XM_007228150.3 mRNA upstream 91284 13662809 ~ 13676841 (+) False ehf
XM_022672163.1 mRNA upstream 91284 13669622 ~ 13676841 (+) False ehf
XM_022672161.1 mRNA upstream 825163 12934452 ~ 12942962 (+) True rag1
XM_022671916.1 mRNA downstream 26053 13794413 ~ 13828422 (+) True cd44
XM_007228159.3 mRNA downstream 240272 14008632 ~ 14011720 (+) True fjx1
XM_022672166.1 mRNA downstream 309652 14078012 ~ 14161299 (+) True trim44
XM_022672167.1 mRNA downstream 469679 14238039 ~ 14389321 (+) True ldlrad3
XM_022672169.1 mRNA downstream 778437 14546797 ~ 14550920 (+) True rccd1
XR_002650241.1 other upstream 870194 12871484 ~ 12897931 (+) False LOC103043719
trnar-ucg_4 other upstream 1164701 12603352 ~ 12603424 (+) True trnar-ucg_4
TU97933 other upstream 3685985 10078579 ~ 10082140 (+) True G72621
TU97487 other upstream 4618706 9142899 ~ 9149419 (+) True G72281
TU96877 other upstream 6882584 6881587 ~ 6885541 (+) True G71788
TU99159 other downstream 880469 14648829 ~ 14649551 (+) True G73533
XR_002650242.1 other downstream 1123174 14891534 ~ 14921003 (+) False rpgrip1l
TU99974 other downstream 2518316 16286676 ~ 16288329 (+) True G74169
TU100573 other downstream 4686491 18454851 ~ 18455197 (+) True G74649
TU100801 other downstream 5314456 19082816 ~ 19085556 (+) True G74832

Expression Profile